miRNA display CGI


Results 1 - 20 of 119 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
27688 5' -49.8 NC_005882.1 + 18406 0.66 0.902449
Target:  5'- -aGACCGGCcuuGCGAcgCGACGCGg- -3'
miRNA:   3'- agCUGGUCGuu-UGUUugGCUGUGCag -5'
27688 5' -49.8 NC_005882.1 + 25881 0.66 0.902449
Target:  5'- gCGACCAGUGu----GCCGACGCcuUCg -3'
miRNA:   3'- aGCUGGUCGUuuguuUGGCUGUGc-AG- -5'
27688 5' -49.8 NC_005882.1 + 1898 0.66 0.902449
Target:  5'- gCGGCCAGCGAAaguGCuCGAugucgcgguuaCGCGUUg -3'
miRNA:   3'- aGCUGGUCGUUUguuUG-GCU-----------GUGCAG- -5'
27688 5' -49.8 NC_005882.1 + 26157 0.66 0.902449
Target:  5'- gCG-CCGGCAGugGCGAcgaaGCCGugACGa- -3'
miRNA:   3'- aGCuGGUCGUU--UGUU----UGGCugUGCag -5'
27688 5' -49.8 NC_005882.1 + 15981 0.66 0.902449
Target:  5'- gCGAgCuGCGcGCGGACgCG-CACGUCg -3'
miRNA:   3'- aGCUgGuCGUuUGUUUG-GCuGUGCAG- -5'
27688 5' -49.8 NC_005882.1 + 18265 0.66 0.895038
Target:  5'- gUGACCAGCAccAGC--GCCuGCGCGaUCu -3'
miRNA:   3'- aGCUGGUCGU--UUGuuUGGcUGUGC-AG- -5'
27688 5' -49.8 NC_005882.1 + 31113 0.66 0.895038
Target:  5'- gCGACuCAGCGaucGACGGAauGACACG-Ca -3'
miRNA:   3'- aGCUG-GUCGU---UUGUUUggCUGUGCaG- -5'
27688 5' -49.8 NC_005882.1 + 3470 0.66 0.895038
Target:  5'- aCG-UCGGCGGugAcGACCGGCACGcCc -3'
miRNA:   3'- aGCuGGUCGUUugU-UUGGCUGUGCaG- -5'
27688 5' -49.8 NC_005882.1 + 24468 0.66 0.895038
Target:  5'- gUCaGCCAGCAuguCuucgccGCCGACGCGg- -3'
miRNA:   3'- -AGcUGGUCGUuu-Guu----UGGCUGUGCag -5'
27688 5' -49.8 NC_005882.1 + 32825 0.66 0.89428
Target:  5'- -aGACUcGCGAGuacgcauCGAGCCGGCGCGa- -3'
miRNA:   3'- agCUGGuCGUUU-------GUUUGGCUGUGCag -5'
27688 5' -49.8 NC_005882.1 + 12393 0.66 0.887323
Target:  5'- cCGAUCGGCGcc---GCCGGCAgcCGUCa -3'
miRNA:   3'- aGCUGGUCGUuuguuUGGCUGU--GCAG- -5'
27688 5' -49.8 NC_005882.1 + 3236 0.66 0.887323
Target:  5'- aCGACUucGCGAgguACGGGCCGAUcuggauCGUCg -3'
miRNA:   3'- aGCUGGu-CGUU---UGUUUGGCUGu-----GCAG- -5'
27688 5' -49.8 NC_005882.1 + 21072 0.66 0.887323
Target:  5'- gUCGGCUucgaugguGGCGuguGCGcAGCCGGCGCGa- -3'
miRNA:   3'- -AGCUGG--------UCGUu--UGU-UUGGCUGUGCag -5'
27688 5' -49.8 NC_005882.1 + 29812 0.66 0.887323
Target:  5'- cUUGACCGGacgaaccuCAAGCAGACUGGCGgcucgGUCg -3'
miRNA:   3'- -AGCUGGUC--------GUUUGUUUGGCUGUg----CAG- -5'
27688 5' -49.8 NC_005882.1 + 25870 0.66 0.887323
Target:  5'- cCGGCCAGaaauCGAACCugcucgGGCGCGUg -3'
miRNA:   3'- aGCUGGUCguuuGUUUGG------CUGUGCAg -5'
27688 5' -49.8 NC_005882.1 + 23010 0.66 0.887323
Target:  5'- aCGGCC-GCGGACAucAUCGGCGCcGUg -3'
miRNA:   3'- aGCUGGuCGUUUGUu-UGGCUGUG-CAg -5'
27688 5' -49.8 NC_005882.1 + 8091 0.66 0.885744
Target:  5'- aCGAuCCAGCAAGCAAuggaaggGCuugcauggcaucgCGGCaACGUCg -3'
miRNA:   3'- aGCU-GGUCGUUUGUU-------UG-------------GCUG-UGCAG- -5'
27688 5' -49.8 NC_005882.1 + 25407 0.66 0.879312
Target:  5'- cUCGGCCGcgucGCcGACGAGCUGcGCGCGa- -3'
miRNA:   3'- -AGCUGGU----CGuUUGUUUGGC-UGUGCag -5'
27688 5' -49.8 NC_005882.1 + 2993 0.66 0.879312
Target:  5'- -aGACCGGCAccgaccuGCGAGCCGcgaACAaCGUa -3'
miRNA:   3'- agCUGGUCGUu------UGUUUGGC---UGU-GCAg -5'
27688 5' -49.8 NC_005882.1 + 2215 0.66 0.879312
Target:  5'- gCGGCCuGCAAGCGuucAUCGaACGCGa- -3'
miRNA:   3'- aGCUGGuCGUUUGUu--UGGC-UGUGCag -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.