miRNA display CGI


Results 1 - 20 of 45 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
27689 5' -67.1 NC_005882.1 + 16072 0.66 0.167349
Target:  5'- gGCCGCCuuGCGGCgGCGCAcgcacccgccgacGuGCGcGUCc -3'
miRNA:   3'- -CGGCGGc-CGCCGgCGCGU-------------C-CGC-CAGa -5'
27689 5' -67.1 NC_005882.1 + 12584 0.66 0.167349
Target:  5'- cGCCGCCGcGacacacuGGCCGCGCgaaagcaGGGCaGGa-- -3'
miRNA:   3'- -CGGCGGC-Cg------CCGGCGCG-------UCCG-CCaga -5'
27689 5' -67.1 NC_005882.1 + 26716 0.66 0.163479
Target:  5'- gGCCGCCcauccCGGCCugaucCGCGGcGUGGUCg -3'
miRNA:   3'- -CGGCGGcc---GCCGGc----GCGUC-CGCCAGa -5'
27689 5' -67.1 NC_005882.1 + 26952 0.66 0.163479
Target:  5'- cGCgGCCGGCaaguucgcGGCCGUGauCGGGCGuGcCg -3'
miRNA:   3'- -CGgCGGCCG--------CCGGCGC--GUCCGC-CaGa -5'
27689 5' -67.1 NC_005882.1 + 33796 0.66 0.159274
Target:  5'- cGCUGCCGGauGCCacaacCGUuccAGGCGGcUCUg -3'
miRNA:   3'- -CGGCGGCCgcCGGc----GCG---UCCGCC-AGA- -5'
27689 5' -67.1 NC_005882.1 + 16314 0.66 0.158858
Target:  5'- aGCUGCCGGCacgcaaguuccugGuGCCGCGCcaggAGGCGa--- -3'
miRNA:   3'- -CGGCGGCCG-------------C-CGGCGCG----UCCGCcaga -5'
27689 5' -67.1 NC_005882.1 + 22535 0.66 0.158031
Target:  5'- aUCGCucagacucccuucaCGGCGaCCGCGUucgcGGCGGUCUu -3'
miRNA:   3'- cGGCG--------------GCCGCcGGCGCGu---CCGCCAGA- -5'
27689 5' -67.1 NC_005882.1 + 36666 0.66 0.155166
Target:  5'- aGCUGuuGcCGGCa--GUAGGCGGUCg -3'
miRNA:   3'- -CGGCggCcGCCGgcgCGUCCGCCAGa -5'
27689 5' -67.1 NC_005882.1 + 29177 0.66 0.155166
Target:  5'- -aCGCCGGCGcGCCGUugcucGCGuGCGGcCg -3'
miRNA:   3'- cgGCGGCCGC-CGGCG-----CGUcCGCCaGa -5'
27689 5' -67.1 NC_005882.1 + 32971 0.66 0.155166
Target:  5'- aGCaGCuCGGCGGCCGCacGCgcuaccugaAGGCgcaGGUCg -3'
miRNA:   3'- -CGgCG-GCCGCCGGCG--CG---------UCCG---CCAGa -5'
27689 5' -67.1 NC_005882.1 + 19263 0.66 0.154761
Target:  5'- gGCCcuugaggGCCGGCGGCUGCGCAccgaGGa-- -3'
miRNA:   3'- -CGG-------CGGCCGCCGGCGCGUccg-CCaga -5'
27689 5' -67.1 NC_005882.1 + 21559 0.66 0.151155
Target:  5'- gGuuGUa-GCGGCCGCGCAaGuGCGcGUCg -3'
miRNA:   3'- -CggCGgcCGCCGGCGCGU-C-CGC-CAGa -5'
27689 5' -67.1 NC_005882.1 + 19922 0.67 0.13968
Target:  5'- gGUCGauuacgCGGCGGCCGCGaacGCGGUg- -3'
miRNA:   3'- -CGGCg-----GCCGCCGGCGCgucCGCCAga -5'
27689 5' -67.1 NC_005882.1 + 26768 0.67 0.12901
Target:  5'- gGCCGggaUgGGCGGCCGCGaacuGcGCGGUg- -3'
miRNA:   3'- -CGGC---GgCCGCCGGCGCgu--C-CGCCAga -5'
27689 5' -67.1 NC_005882.1 + 27110 0.67 0.12901
Target:  5'- uGCUGCUGGC--CCGCGUccuGGGCGGcCa -3'
miRNA:   3'- -CGGCGGCCGccGGCGCG---UCCGCCaGa -5'
27689 5' -67.1 NC_005882.1 + 12064 0.67 0.127985
Target:  5'- aGCCGCUGGCGcgcggacgccgucaGCgucguuggugCGCGCGGGauGUCUc -3'
miRNA:   3'- -CGGCGGCCGC--------------CG----------GCGCGUCCgcCAGA- -5'
27689 5' -67.1 NC_005882.1 + 15041 0.67 0.122319
Target:  5'- uGCCGaagaaCaGCGGCgGCGCAuGGCuGUCg -3'
miRNA:   3'- -CGGCg----GcCGCCGgCGCGU-CCGcCAGa -5'
27689 5' -67.1 NC_005882.1 + 6652 0.67 0.119097
Target:  5'- cGCCGUgcgucuCGGCGuGCUGCGCcaagguuucgaAGGCGG-Ca -3'
miRNA:   3'- -CGGCG------GCCGC-CGGCGCG-----------UCCGCCaGa -5'
27689 5' -67.1 NC_005882.1 + 5426 0.68 0.112887
Target:  5'- cGCCGUCGaucgauGUGuGCCGCGaauuGGCGGUUg -3'
miRNA:   3'- -CGGCGGC------CGC-CGGCGCgu--CCGCCAGa -5'
27689 5' -67.1 NC_005882.1 + 14261 0.68 0.111982
Target:  5'- gGCCG-CGGCGGCCGCuuccgcGCgugccugcaccuccAGGCGGa-- -3'
miRNA:   3'- -CGGCgGCCGCCGGCG------CG--------------UCCGCCaga -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.