miRNA display CGI


Results 1 - 20 of 62 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
27700 5' -54.6 NC_005882.1 + 12548 0.66 0.648189
Target:  5'- gGCCG-GCGCUgCGGCGA--UCGGCGc -3'
miRNA:   3'- -CGGCuCGCGGaGCUGUUguAGCUGUa -5'
27700 5' -54.6 NC_005882.1 + 13754 0.66 0.648189
Target:  5'- aUCGAucGUGUaCUCGGCGAUGUCGACGc -3'
miRNA:   3'- cGGCU--CGCG-GAGCUGUUGUAGCUGUa -5'
27700 5' -54.6 NC_005882.1 + 28582 0.66 0.648189
Target:  5'- uGCCGGcCGCCUCGGgAAUcugGUCGGuCAg -3'
miRNA:   3'- -CGGCUcGCGGAGCUgUUG---UAGCU-GUa -5'
27700 5' -54.6 NC_005882.1 + 24535 0.66 0.648189
Target:  5'- cGCCGAagcGgGCCaaGACGACAaCGACu- -3'
miRNA:   3'- -CGGCU---CgCGGagCUGUUGUaGCUGua -5'
27700 5' -54.6 NC_005882.1 + 11838 0.66 0.648189
Target:  5'- cGCCGcGCGgugaucguCCUCGGCGucguaGUCGGCGUc -3'
miRNA:   3'- -CGGCuCGC--------GGAGCUGUug---UAGCUGUA- -5'
27700 5' -54.6 NC_005882.1 + 15750 0.66 0.636779
Target:  5'- cGCCaGAGCaaccGCUaCGGCGGCGUCGcCGUg -3'
miRNA:   3'- -CGG-CUCG----CGGaGCUGUUGUAGCuGUA- -5'
27700 5' -54.6 NC_005882.1 + 17926 0.66 0.636779
Target:  5'- cGCCGGcCGCCUCGACcuugauGCcUCGcACGa -3'
miRNA:   3'- -CGGCUcGCGGAGCUGu-----UGuAGC-UGUa -5'
27700 5' -54.6 NC_005882.1 + 6652 0.66 0.636779
Target:  5'- cGCCGuGCGUCUCGGCGugcugCGcCAa -3'
miRNA:   3'- -CGGCuCGCGGAGCUGUugua-GCuGUa -5'
27700 5' -54.6 NC_005882.1 + 33114 0.66 0.636779
Target:  5'- gGCCaAGCGCC-CGGCAuGC-UCGAUAc -3'
miRNA:   3'- -CGGcUCGCGGaGCUGU-UGuAGCUGUa -5'
27700 5' -54.6 NC_005882.1 + 11968 0.66 0.625365
Target:  5'- cGCCGAGCaaCgCGACGACAaaGGCGa -3'
miRNA:   3'- -CGGCUCGcgGaGCUGUUGUagCUGUa -5'
27700 5' -54.6 NC_005882.1 + 5321 0.66 0.625365
Target:  5'- cGUCG-GUGCCgggCGuCAugGUCGGCGa -3'
miRNA:   3'- -CGGCuCGCGGa--GCuGUugUAGCUGUa -5'
27700 5' -54.6 NC_005882.1 + 12599 0.66 0.613958
Target:  5'- cGCCGcAGCGCCggCcGCcGCcgCGACAc -3'
miRNA:   3'- -CGGC-UCGCGGa-GcUGuUGuaGCUGUa -5'
27700 5' -54.6 NC_005882.1 + 21276 0.66 0.613958
Target:  5'- gGCCGGccGCGUC-CGACucGACcUCGGCAUg -3'
miRNA:   3'- -CGGCU--CGCGGaGCUG--UUGuAGCUGUA- -5'
27700 5' -54.6 NC_005882.1 + 14213 0.66 0.613958
Target:  5'- gGCCGccGCgGCCgUCGACAAgGUCGuCAa -3'
miRNA:   3'- -CGGCu-CG-CGG-AGCUGUUgUAGCuGUa -5'
27700 5' -54.6 NC_005882.1 + 19144 0.66 0.602567
Target:  5'- cGCCcGGCGCC--GACGAguUCGGCGa -3'
miRNA:   3'- -CGGcUCGCGGagCUGUUguAGCUGUa -5'
27700 5' -54.6 NC_005882.1 + 811 0.66 0.602567
Target:  5'- uUCGAGCGCgUCGACGuGCGUCa---- -3'
miRNA:   3'- cGGCUCGCGgAGCUGU-UGUAGcugua -5'
27700 5' -54.6 NC_005882.1 + 12804 0.66 0.602567
Target:  5'- uGCCGGGCuUCUCGGCgAACAggucgcCGGCGa -3'
miRNA:   3'- -CGGCUCGcGGAGCUG-UUGUa-----GCUGUa -5'
27700 5' -54.6 NC_005882.1 + 5008 0.66 0.602567
Target:  5'- -gCGAGCGgCUU--CAGCGUCGGCAg -3'
miRNA:   3'- cgGCUCGCgGAGcuGUUGUAGCUGUa -5'
27700 5' -54.6 NC_005882.1 + 28548 0.67 0.591204
Target:  5'- cGCC-AGCGCUggCGACAGCuUCGcCAg -3'
miRNA:   3'- -CGGcUCGCGGa-GCUGUUGuAGCuGUa -5'
27700 5' -54.6 NC_005882.1 + 4822 0.67 0.591204
Target:  5'- cGCCG-GCaGCUUCGACAGCGgccUUGAUc- -3'
miRNA:   3'- -CGGCuCG-CGGAGCUGUUGU---AGCUGua -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.