miRNA display CGI


Results 1 - 20 of 70 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
27704 3' -51.4 NC_005882.1 + 11878 0.65 0.792962
Target:  5'- -gCGGCGA-AGCAUGGccgcggcgaacaccAGCUCGUAGCc -3'
miRNA:   3'- aaGCUGUUgUCGUGCU--------------UCGAGCGUUG- -5'
27704 3' -51.4 NC_005882.1 + 28890 0.66 0.785554
Target:  5'- aUCGGCAc--GCugG-GGUUCGCGGCa -3'
miRNA:   3'- aAGCUGUuguCGugCuUCGAGCGUUG- -5'
27704 3' -51.4 NC_005882.1 + 35897 0.66 0.785554
Target:  5'- -cCGGCAgaagGCAGCgaucGCGAcGCUgacCGCAACa -3'
miRNA:   3'- aaGCUGU----UGUCG----UGCUuCGA---GCGUUG- -5'
27704 3' -51.4 NC_005882.1 + 14393 0.66 0.785554
Target:  5'- -aCGGCAGCAGgACGgcGggCGCAc- -3'
miRNA:   3'- aaGCUGUUGUCgUGCuuCgaGCGUug -5'
27704 3' -51.4 NC_005882.1 + 9835 0.66 0.784488
Target:  5'- gUUCGAgAACGGUACGccguGGUugacguugacaugUCGCGACc -3'
miRNA:   3'- -AAGCUgUUGUCGUGCu---UCG-------------AGCGUUG- -5'
27704 3' -51.4 NC_005882.1 + 4857 0.66 0.774814
Target:  5'- gUCGACuGgAGCGCGGaccgguuccgcuGGCU-GCAACa -3'
miRNA:   3'- aAGCUGuUgUCGUGCU------------UCGAgCGUUG- -5'
27704 3' -51.4 NC_005882.1 + 27447 0.66 0.763903
Target:  5'- gUUCGGCAGCAacGUgaaaGCGuGGUUCGCGAa -3'
miRNA:   3'- -AAGCUGUUGU--CG----UGCuUCGAGCGUUg -5'
27704 3' -51.4 NC_005882.1 + 11981 0.66 0.763903
Target:  5'- -aCGggcGCGGCGGCGCcGAGCaaCGCGACg -3'
miRNA:   3'- aaGC---UGUUGUCGUGcUUCGa-GCGUUG- -5'
27704 3' -51.4 NC_005882.1 + 31589 0.66 0.763903
Target:  5'- aUCGGgAACGGCugGcAGC-CGgGGCa -3'
miRNA:   3'- aAGCUgUUGUCGugCuUCGaGCgUUG- -5'
27704 3' -51.4 NC_005882.1 + 31487 0.66 0.763903
Target:  5'- -aCGAgCGACGGCGCugucucGUUCGCGACc -3'
miRNA:   3'- aaGCU-GUUGUCGUGcuu---CGAGCGUUG- -5'
27704 3' -51.4 NC_005882.1 + 17288 0.66 0.763903
Target:  5'- cUCGGCuACuGCAUGAAGCU-GCcGCc -3'
miRNA:   3'- aAGCUGuUGuCGUGCUUCGAgCGuUG- -5'
27704 3' -51.4 NC_005882.1 + 13576 0.66 0.763903
Target:  5'- -cCGACAucACGGCGCuuGAGGUgCGCAAg -3'
miRNA:   3'- aaGCUGU--UGUCGUG--CUUCGaGCGUUg -5'
27704 3' -51.4 NC_005882.1 + 29100 0.66 0.763903
Target:  5'- gUCGGuauacgccacCGACAGCACGuAGggCGCGAUg -3'
miRNA:   3'- aAGCU----------GUUGUCGUGCuUCgaGCGUUG- -5'
27704 3' -51.4 NC_005882.1 + 15136 0.66 0.762803
Target:  5'- -cCGACAu--GCGCGAcucgaucAGCgcgCGCGACa -3'
miRNA:   3'- aaGCUGUuguCGUGCU-------UCGa--GCGUUG- -5'
27704 3' -51.4 NC_005882.1 + 29170 0.66 0.752834
Target:  5'- aUCGGCuacgcCGGCGCGccguuGCUCGCGuGCg -3'
miRNA:   3'- aAGCUGuu---GUCGUGCuu---CGAGCGU-UG- -5'
27704 3' -51.4 NC_005882.1 + 32457 0.66 0.752834
Target:  5'- -gCGAgGACGGCugGAGuCUCGCc-- -3'
miRNA:   3'- aaGCUgUUGUCGugCUUcGAGCGuug -5'
27704 3' -51.4 NC_005882.1 + 16044 0.66 0.741623
Target:  5'- -cCGACGugcGCGuccGCGCGcAGCUCGCggUa -3'
miRNA:   3'- aaGCUGU---UGU---CGUGCuUCGAGCGuuG- -5'
27704 3' -51.4 NC_005882.1 + 7612 0.66 0.741623
Target:  5'- cUgGAguGCgccgAGCACGAAG-UCGCAGCa -3'
miRNA:   3'- aAgCUguUG----UCGUGCUUCgAGCGUUG- -5'
27704 3' -51.4 NC_005882.1 + 6682 0.66 0.741623
Target:  5'- uUUCGAaGGCGGCACGcAGgUUGCcGCg -3'
miRNA:   3'- -AAGCUgUUGUCGUGCuUCgAGCGuUG- -5'
27704 3' -51.4 NC_005882.1 + 6540 0.66 0.738233
Target:  5'- -cCGACuucuCAcGCGCcgcuaacugauucgGggGCUCGCGACg -3'
miRNA:   3'- aaGCUGuu--GU-CGUG--------------CuuCGAGCGUUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.