miRNA display CGI


Results 1 - 20 of 64 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
27928 3' -56.6 NC_005886.2 + 28784 0.66 0.637432
Target:  5'- --cCACGAugGC-ACGaaCGGUGCGAc -3'
miRNA:   3'- gauGUGCUugCGuUGCcgGCCGCGCU- -5'
27928 3' -56.6 NC_005886.2 + 27065 0.66 0.626469
Target:  5'- --cCGCGuaGAUGUAgaaACGGCCcGCGCGAu -3'
miRNA:   3'- gauGUGC--UUGCGU---UGCCGGcCGCGCU- -5'
27928 3' -56.6 NC_005886.2 + 32842 0.66 0.626469
Target:  5'- -cAgACGAACGCAugauCcGCuCGGUGCGGa -3'
miRNA:   3'- gaUgUGCUUGCGUu---GcCG-GCCGCGCU- -5'
27928 3' -56.6 NC_005886.2 + 19493 0.66 0.626469
Target:  5'- -gGCACGuGGgGCuugcCGGCCGGCuCGAu -3'
miRNA:   3'- gaUGUGC-UUgCGuu--GCCGGCCGcGCU- -5'
27928 3' -56.6 NC_005886.2 + 11941 0.66 0.626469
Target:  5'- -gGguCGGGCGUggcaAACGGCCGGUG-GAu -3'
miRNA:   3'- gaUguGCUUGCG----UUGCCGGCCGCgCU- -5'
27928 3' -56.6 NC_005886.2 + 15147 0.66 0.625372
Target:  5'- aUACAUGAauucgGCGCAccaucgcGCGGCauccccGCGCGAu -3'
miRNA:   3'- gAUGUGCU-----UGCGU-------UGCCGgc----CGCGCU- -5'
27928 3' -56.6 NC_005886.2 + 7190 0.66 0.604566
Target:  5'- --gUACGAcaACaCGACGGCCGGCaGCu- -3'
miRNA:   3'- gauGUGCU--UGcGUUGCCGGCCG-CGcu -5'
27928 3' -56.6 NC_005886.2 + 24915 0.66 0.604566
Target:  5'- -aACGCcccGCGCGAcCGGCUcGCGCGGg -3'
miRNA:   3'- gaUGUGcu-UGCGUU-GCCGGcCGCGCU- -5'
27928 3' -56.6 NC_005886.2 + 43761 0.66 0.593646
Target:  5'- -gACGCuGGCGCAGCGuUgGGCGCGc -3'
miRNA:   3'- gaUGUGcUUGCGUUGCcGgCCGCGCu -5'
27928 3' -56.6 NC_005886.2 + 11574 0.66 0.593646
Target:  5'- gCUAUGuCGAACuccCGGgGGCCGGUGCGc -3'
miRNA:   3'- -GAUGU-GCUUGc--GUUgCCGGCCGCGCu -5'
27928 3' -56.6 NC_005886.2 + 46904 0.66 0.593646
Target:  5'- -aGCGCGAuuuucuGCGCGACGagugcGCCGGCaaGCa- -3'
miRNA:   3'- gaUGUGCU------UGCGUUGC-----CGGCCG--CGcu -5'
27928 3' -56.6 NC_005886.2 + 36330 0.66 0.587108
Target:  5'- -gGCACGGGCgGCAcgggcggugguacggGCGGCauCGGCgGCGGc -3'
miRNA:   3'- gaUGUGCUUG-CGU---------------UGCCG--GCCG-CGCU- -5'
27928 3' -56.6 NC_005886.2 + 2733 0.66 0.582758
Target:  5'- -aACGguuCGAAucuuCGC-GCGGCCGGCGUGu -3'
miRNA:   3'- gaUGU---GCUU----GCGuUGCCGGCCGCGCu -5'
27928 3' -56.6 NC_005886.2 + 38819 0.66 0.582758
Target:  5'- gUGCcCGcAGCGCAGCGGUCGccgaGCGGa -3'
miRNA:   3'- gAUGuGC-UUGCGUUGCCGGCcg--CGCU- -5'
27928 3' -56.6 NC_005886.2 + 22896 0.67 0.57191
Target:  5'- -aACuCGGGCGaUAGCGuGCCGGUGCu- -3'
miRNA:   3'- gaUGuGCUUGC-GUUGC-CGGCCGCGcu -5'
27928 3' -56.6 NC_005886.2 + 25819 0.67 0.57191
Target:  5'- -aACGCagccauAGCGCAAUGGCUGGCGa-- -3'
miRNA:   3'- gaUGUGc-----UUGCGUUGCCGGCCGCgcu -5'
27928 3' -56.6 NC_005886.2 + 33146 0.67 0.561111
Target:  5'- -aACGCuGcAugGCAugGGCCGGU-CGAu -3'
miRNA:   3'- gaUGUG-C-UugCGUugCCGGCCGcGCU- -5'
27928 3' -56.6 NC_005886.2 + 42918 0.67 0.550369
Target:  5'- -cGCACGuucgauGCGCAACaauuccguGUCGGCGCGu -3'
miRNA:   3'- gaUGUGCu-----UGCGUUGc-------CGGCCGCGCu -5'
27928 3' -56.6 NC_005886.2 + 16691 0.67 0.533319
Target:  5'- -cGCugGAaaucaucgcagaccuGCGCAACGGCCuuaccGCGCu- -3'
miRNA:   3'- gaUGugCU---------------UGCGUUGCCGGc----CGCGcu -5'
27928 3' -56.6 NC_005886.2 + 24759 0.67 0.529085
Target:  5'- -cGCGCGGACGCGgggcuucuaGCGGCCGucaaGCa- -3'
miRNA:   3'- gaUGUGCUUGCGU---------UGCCGGCcg--CGcu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.