miRNA display CGI


Results 1 - 20 of 66 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
27983 5' -54.4 NC_005886.2 + 40993 0.66 0.759061
Target:  5'- cGcACCGUcAUGGcuGUGuCgGCAACCGGCa -3'
miRNA:   3'- aC-UGGCAuUGCU--CGCuG-CGUUGGCCG- -5'
27983 5' -54.4 NC_005886.2 + 1739 0.66 0.759061
Target:  5'- gUGG-CGUAugGcccguuGCGGCGgGugCGGCa -3'
miRNA:   3'- -ACUgGCAUugCu-----CGCUGCgUugGCCG- -5'
27983 5' -54.4 NC_005886.2 + 44031 0.66 0.759061
Target:  5'- uUGugC--AAgGuGCGAUGCAagcgGCCGGCg -3'
miRNA:   3'- -ACugGcaUUgCuCGCUGCGU----UGGCCG- -5'
27983 5' -54.4 NC_005886.2 + 15390 0.66 0.759061
Target:  5'- -aGCCGUuuuuAAUcGGCGGCGCAAgCGuGCu -3'
miRNA:   3'- acUGGCA----UUGcUCGCUGCGUUgGC-CG- -5'
27983 5' -54.4 NC_005886.2 + 17128 0.66 0.759061
Target:  5'- aGACCG--GCGAcaGCGGCGaCAG-CGGUg -3'
miRNA:   3'- aCUGGCauUGCU--CGCUGC-GUUgGCCG- -5'
27983 5' -54.4 NC_005886.2 + 7231 0.66 0.759061
Target:  5'- uUGACUGUuuGCGAaauaucguGCGAaGUAcGCCGGCu -3'
miRNA:   3'- -ACUGGCAu-UGCU--------CGCUgCGU-UGGCCG- -5'
27983 5' -54.4 NC_005886.2 + 44189 0.66 0.748661
Target:  5'- --gUCGgcACGAguuGCGGCGCAGCgacggggguCGGCa -3'
miRNA:   3'- acuGGCauUGCU---CGCUGCGUUG---------GCCG- -5'
27983 5' -54.4 NC_005886.2 + 6655 0.66 0.748661
Target:  5'- aUGugCGUGgauuGCGucacgccuGCGAuaacCGCAuCCGGCa -3'
miRNA:   3'- -ACugGCAU----UGCu-------CGCU----GCGUuGGCCG- -5'
27983 5' -54.4 NC_005886.2 + 46766 0.66 0.748661
Target:  5'- gGACgGUcGCGAuauuGCGGaccugauuCGCAACCcGGCa -3'
miRNA:   3'- aCUGgCAuUGCU----CGCU--------GCGUUGG-CCG- -5'
27983 5' -54.4 NC_005886.2 + 43834 0.66 0.742364
Target:  5'- cGGCaGgcAUGGGCGcaccggcaggcauggGCGC-ACCGGCa -3'
miRNA:   3'- aCUGgCauUGCUCGC---------------UGCGuUGGCCG- -5'
27983 5' -54.4 NC_005886.2 + 28782 0.66 0.738142
Target:  5'- gGAgcUUGUGACGuGCGAUGUucACgCGGCa -3'
miRNA:   3'- aCU--GGCAUUGCuCGCUGCGu-UG-GCCG- -5'
27983 5' -54.4 NC_005886.2 + 22862 0.66 0.738142
Target:  5'- cGACCGaaucGAUGAGUGuguACGCAACCu-- -3'
miRNA:   3'- aCUGGCa---UUGCUCGC---UGCGUUGGccg -5'
27983 5' -54.4 NC_005886.2 + 16224 0.66 0.738142
Target:  5'- cUGACgGUAgguugcgaACGGGCGcuucaacauCGCG-CCGGCc -3'
miRNA:   3'- -ACUGgCAU--------UGCUCGCu--------GCGUuGGCCG- -5'
27983 5' -54.4 NC_005886.2 + 19180 0.66 0.737084
Target:  5'- cGGCCGcuucGAUGAugcugagacauucGCGAUGCAG-CGGCg -3'
miRNA:   3'- aCUGGCa---UUGCU-------------CGCUGCGUUgGCCG- -5'
27983 5' -54.4 NC_005886.2 + 43888 0.66 0.734964
Target:  5'- cGGCaGgcAUGGGCGcaccggcaggauggGCGC-ACCGGCa -3'
miRNA:   3'- aCUGgCauUGCUCGC--------------UGCGuUGGCCG- -5'
27983 5' -54.4 NC_005886.2 + 24531 0.66 0.727514
Target:  5'- uUGACa-UggUGcGCGGCGUcacuGGCCGGCg -3'
miRNA:   3'- -ACUGgcAuuGCuCGCUGCG----UUGGCCG- -5'
27983 5' -54.4 NC_005886.2 + 43352 0.66 0.727514
Target:  5'- ---gCGUGACGAGCGGCuuacccucaCGAUCGGUu -3'
miRNA:   3'- acugGCAUUGCUCGCUGc--------GUUGGCCG- -5'
27983 5' -54.4 NC_005886.2 + 33926 0.66 0.71679
Target:  5'- cGACgGUGGCGgaaaccauucGGuCGGCGCGGCuuCGGUa -3'
miRNA:   3'- aCUGgCAUUGC----------UC-GCUGCGUUG--GCCG- -5'
27983 5' -54.4 NC_005886.2 + 44224 0.67 0.70598
Target:  5'- aGaACUGUug-GAGCG-UGUAGCCGGCc -3'
miRNA:   3'- aC-UGGCAuugCUCGCuGCGUUGGCCG- -5'
27983 5' -54.4 NC_005886.2 + 10694 0.67 0.695097
Target:  5'- uUGAgCGUgaAugGAGUGACuGC-GCCGGg -3'
miRNA:   3'- -ACUgGCA--UugCUCGCUG-CGuUGGCCg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.