miRNA display CGI


Results 1 - 20 of 62 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28000 5' -55.7 NC_005887.1 + 3236 0.66 0.650207
Target:  5'- uGUUCGauuCGACCgCGCCGcUCGCgcugcgcaacuuCGUCGCc -3'
miRNA:   3'- -CAAGU---GCUGG-GUGGCuAGCG------------GCAGUG- -5'
28000 5' -55.7 NC_005887.1 + 27630 0.66 0.650207
Target:  5'- -aUCGuCG-CCUGCgCGAUCGCCG-CGCc -3'
miRNA:   3'- caAGU-GCuGGGUG-GCUAGCGGCaGUG- -5'
28000 5' -55.7 NC_005887.1 + 5507 0.66 0.650207
Target:  5'- -gUCGCGAUCCAgCGcAagGCUGUCGa -3'
miRNA:   3'- caAGUGCUGGGUgGC-UagCGGCAGUg -5'
28000 5' -55.7 NC_005887.1 + 34951 0.66 0.650207
Target:  5'- ---uGCGACCgUGgCGAUCGUCGUCGg -3'
miRNA:   3'- caagUGCUGG-GUgGCUAGCGGCAGUg -5'
28000 5' -55.7 NC_005887.1 + 31333 0.66 0.639077
Target:  5'- --cCACGugCCgACCGGgcCGUCGUCGa -3'
miRNA:   3'- caaGUGCugGG-UGGCUa-GCGGCAGUg -5'
28000 5' -55.7 NC_005887.1 + 37666 0.66 0.639077
Target:  5'- --gCGCG-CCCAUCaGAcccUCGCCGUCuGCg -3'
miRNA:   3'- caaGUGCuGGGUGG-CU---AGCGGCAG-UG- -5'
28000 5' -55.7 NC_005887.1 + 7499 0.66 0.639077
Target:  5'- --cCGCGAUCaagUCGGUUGCCGUCGa -3'
miRNA:   3'- caaGUGCUGGgu-GGCUAGCGGCAGUg -5'
28000 5' -55.7 NC_005887.1 + 30437 0.66 0.63685
Target:  5'- uGUUCACGccagacgugagcCCCGCCGugaaGUUGCCGgCGCu -3'
miRNA:   3'- -CAAGUGCu-----------GGGUGGC----UAGCGGCaGUG- -5'
28000 5' -55.7 NC_005887.1 + 36348 0.66 0.635736
Target:  5'- -cUCAgCGACgCACCGAUCuGCgaaaacaucuugauCGUCGCu -3'
miRNA:   3'- caAGU-GCUGgGUGGCUAG-CG--------------GCAGUG- -5'
28000 5' -55.7 NC_005887.1 + 29904 0.66 0.62794
Target:  5'- cUUCACGGCCCACUcccacaUGCCGcgggccUCGCg -3'
miRNA:   3'- cAAGUGCUGGGUGGcua---GCGGC------AGUG- -5'
28000 5' -55.7 NC_005887.1 + 33266 0.66 0.62794
Target:  5'- -cUCGCGAaacuucguCCCGCCGca-GCCGgcgCACu -3'
miRNA:   3'- caAGUGCU--------GGGUGGCuagCGGCa--GUG- -5'
28000 5' -55.7 NC_005887.1 + 5380 0.66 0.62794
Target:  5'- --gCuCGACCCGCgCGA-CGCCGagACg -3'
miRNA:   3'- caaGuGCUGGGUG-GCUaGCGGCagUG- -5'
28000 5' -55.7 NC_005887.1 + 16522 0.66 0.605688
Target:  5'- -aUCGCGuCgCCGCCGG-CGCCGagugggCGCg -3'
miRNA:   3'- caAGUGCuG-GGUGGCUaGCGGCa-----GUG- -5'
28000 5' -55.7 NC_005887.1 + 6535 0.66 0.604577
Target:  5'- -aUCGCc-CCCGCCGAauucacggggcugUCGCCG-CGCu -3'
miRNA:   3'- caAGUGcuGGGUGGCU-------------AGCGGCaGUG- -5'
28000 5' -55.7 NC_005887.1 + 14672 0.66 0.594592
Target:  5'- gGUUCgACGcugcCCCGCaCGAUCGggcUCGUCGCg -3'
miRNA:   3'- -CAAG-UGCu---GGGUG-GCUAGC---GGCAGUG- -5'
28000 5' -55.7 NC_005887.1 + 7389 0.66 0.594592
Target:  5'- cGUUCA--GCUCGCCGAcgacgaUCGCCacgGUCGCa -3'
miRNA:   3'- -CAAGUgcUGGGUGGCU------AGCGG---CAGUG- -5'
28000 5' -55.7 NC_005887.1 + 29387 0.66 0.594592
Target:  5'- --cCuCGGCCCauGCCGG-CGCgGUCGCg -3'
miRNA:   3'- caaGuGCUGGG--UGGCUaGCGgCAGUG- -5'
28000 5' -55.7 NC_005887.1 + 37567 0.67 0.583529
Target:  5'- --gCACGGCCuCGCCGGcUGgCGUCAg -3'
miRNA:   3'- caaGUGCUGG-GUGGCUaGCgGCAGUg -5'
28000 5' -55.7 NC_005887.1 + 22422 0.67 0.583529
Target:  5'- -cUCGuCGugCUGCUguucugcaugugGAUUGCCGUCACg -3'
miRNA:   3'- caAGU-GCugGGUGG------------CUAGCGGCAGUG- -5'
28000 5' -55.7 NC_005887.1 + 34469 0.67 0.583529
Target:  5'- cGUUCgcGCGGCUCGcgcCCGAgaaGCUGUCGCc -3'
miRNA:   3'- -CAAG--UGCUGGGU---GGCUag-CGGCAGUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.