miRNA display CGI


Results 1 - 20 of 136 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28008 3' -55.1 NC_005887.1 + 20542 0.66 0.709057
Target:  5'- --gCGCCCGGCAgCGCCGcgGACgucGUGUu -3'
miRNA:   3'- ggaGCGGGCUGU-GUGGC--UUGaa-CGCG- -5'
28008 3' -55.1 NC_005887.1 + 11352 0.66 0.709057
Target:  5'- gCCgCGCCacgcgagaGACGCAccCCGAACagUGgGCg -3'
miRNA:   3'- -GGaGCGGg-------CUGUGU--GGCUUGa-ACgCG- -5'
28008 3' -55.1 NC_005887.1 + 41327 0.66 0.709057
Target:  5'- cCUUCGUCCGcuuCAaGCCGGugUacaGCGCg -3'
miRNA:   3'- -GGAGCGGGCu--GUgUGGCUugAa--CGCG- -5'
28008 3' -55.1 NC_005887.1 + 982 0.66 0.709057
Target:  5'- -aUCG-CCGACACgcgcaauuGCCGGccGCcgUGCGCg -3'
miRNA:   3'- ggAGCgGGCUGUG--------UGGCU--UGa-ACGCG- -5'
28008 3' -55.1 NC_005887.1 + 30802 0.66 0.709057
Target:  5'- aCCgccgCGCgCuGCGCGCCGAGCUgcUGaucaGCu -3'
miRNA:   3'- -GGa---GCGgGcUGUGUGGCUUGA--ACg---CG- -5'
28008 3' -55.1 NC_005887.1 + 36392 0.66 0.698207
Target:  5'- -aUCGCCgGACGCGCC-AGCgaGCu- -3'
miRNA:   3'- ggAGCGGgCUGUGUGGcUUGaaCGcg -5'
28008 3' -55.1 NC_005887.1 + 33726 0.66 0.698207
Target:  5'- uUUCGCCagauCGACacguGCACCGAGCaacgGCGa -3'
miRNA:   3'- gGAGCGG----GCUG----UGUGGCUUGaa--CGCg -5'
28008 3' -55.1 NC_005887.1 + 7433 0.66 0.698207
Target:  5'- gCCUCGUuuGGCGCu---GGCgUGCGCg -3'
miRNA:   3'- -GGAGCGggCUGUGuggcUUGaACGCG- -5'
28008 3' -55.1 NC_005887.1 + 6783 0.66 0.697119
Target:  5'- gCCgugUGCCCGGCGCucGCCGcacaugucgagcaGACcaucgGCGCu -3'
miRNA:   3'- -GGa--GCGGGCUGUG--UGGC-------------UUGaa---CGCG- -5'
28008 3' -55.1 NC_005887.1 + 11720 0.66 0.697119
Target:  5'- gCUUCGCCgcgcgcaCGGCGCGCaCGAAUgcaCGCa -3'
miRNA:   3'- -GGAGCGG-------GCUGUGUG-GCUUGaacGCG- -5'
28008 3' -55.1 NC_005887.1 + 314 0.66 0.687293
Target:  5'- gCCgcggugCGCgCG-UACACCGAGgaagUGCGCg -3'
miRNA:   3'- -GGa-----GCGgGCuGUGUGGCUUga--ACGCG- -5'
28008 3' -55.1 NC_005887.1 + 23906 0.66 0.687293
Target:  5'- uCUUCGCCUGcgucgagauCGCGCCGAucagcgucguGCUgacgacgGCGCc -3'
miRNA:   3'- -GGAGCGGGCu--------GUGUGGCU----------UGAa------CGCG- -5'
28008 3' -55.1 NC_005887.1 + 39773 0.66 0.687293
Target:  5'- cUCUgGUCgCGGCgcucGCGCCGAucgUUGCGCg -3'
miRNA:   3'- -GGAgCGG-GCUG----UGUGGCUug-AACGCG- -5'
28008 3' -55.1 NC_005887.1 + 17323 0.66 0.687293
Target:  5'- uUCUgCGCuaCCGGCugGCCGGcggccGCcgGCGCg -3'
miRNA:   3'- -GGA-GCG--GGCUGugUGGCU-----UGaaCGCG- -5'
28008 3' -55.1 NC_005887.1 + 6423 0.66 0.687293
Target:  5'- -aUCGCCguguggccggaCGGcCGCGCCGAGaucgaagUGCGCg -3'
miRNA:   3'- ggAGCGG-----------GCU-GUGUGGCUUga-----ACGCG- -5'
28008 3' -55.1 NC_005887.1 + 40080 0.66 0.687293
Target:  5'- gCUUCaGCUCGAU-C-CCGAACUUacGCGCg -3'
miRNA:   3'- -GGAG-CGGGCUGuGuGGCUUGAA--CGCG- -5'
28008 3' -55.1 NC_005887.1 + 33868 0.66 0.687293
Target:  5'- aCUCgaGCCaCGuguCGuCGCCGAGCgguUGCGCc -3'
miRNA:   3'- gGAG--CGG-GCu--GU-GUGGCUUGa--ACGCG- -5'
28008 3' -55.1 NC_005887.1 + 38892 0.66 0.687293
Target:  5'- gCCagGCCCGaACAgACCGAugcuCUgguagucGCGCc -3'
miRNA:   3'- -GGagCGGGC-UGUgUGGCUu---GAa------CGCG- -5'
28008 3' -55.1 NC_005887.1 + 27059 0.66 0.680717
Target:  5'- --cCGCCCGACuucuuCA-CGAACUcggugccgcgcuugcUGCGCu -3'
miRNA:   3'- ggaGCGGGCUGu----GUgGCUUGA---------------ACGCG- -5'
28008 3' -55.1 NC_005887.1 + 27135 0.66 0.676324
Target:  5'- aCUCGUCggCGAuCACgcgGCCGAACggccacggGCGCg -3'
miRNA:   3'- gGAGCGG--GCU-GUG---UGGCUUGaa------CGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.