miRNA display CGI


Results 41 - 60 of 136 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28008 3' -55.1 NC_005887.1 + 28325 0.7 0.441044
Target:  5'- gCUgCGCCggCGGCGCGCCGGcgguuGCggagGCGCg -3'
miRNA:   3'- gGA-GCGG--GCUGUGUGGCU-----UGaa--CGCG- -5'
28008 3' -55.1 NC_005887.1 + 28276 0.71 0.41225
Target:  5'- ---aGCaucauCGGCACGCCGAGCgcGCGCa -3'
miRNA:   3'- ggagCGg----GCUGUGUGGCUUGaaCGCG- -5'
28008 3' -55.1 NC_005887.1 + 28159 0.75 0.239083
Target:  5'- aCCUCGCacgCCGACuggucgucgagcaACAUCGGGCUgUGCGCc -3'
miRNA:   3'- -GGAGCG---GGCUG-------------UGUGGCUUGA-ACGCG- -5'
28008 3' -55.1 NC_005887.1 + 27801 0.7 0.441044
Target:  5'- uCCgCGCgCGACAUGCCGAuCgacGCGCc -3'
miRNA:   3'- -GGaGCGgGCUGUGUGGCUuGaa-CGCG- -5'
28008 3' -55.1 NC_005887.1 + 27352 0.67 0.598956
Target:  5'- gCUCGggCGGCACGCCugcGGCcUGCGCg -3'
miRNA:   3'- gGAGCggGCUGUGUGGc--UUGaACGCG- -5'
28008 3' -55.1 NC_005887.1 + 27324 0.69 0.522924
Target:  5'- aCUCGUCCGGcCACGUCG-ACU-GCGCc -3'
miRNA:   3'- gGAGCGGGCU-GUGUGGCuUGAaCGCG- -5'
28008 3' -55.1 NC_005887.1 + 27228 0.8 0.114475
Target:  5'- gUCggGUCCGugACGCCGuACUUGCGCa -3'
miRNA:   3'- -GGagCGGGCugUGUGGCuUGAACGCG- -5'
28008 3' -55.1 NC_005887.1 + 27135 0.66 0.676324
Target:  5'- aCUCGUCggCGAuCACgcgGCCGAACggccacggGCGCg -3'
miRNA:   3'- gGAGCGG--GCU-GUG---UGGCUUGaa------CGCG- -5'
28008 3' -55.1 NC_005887.1 + 27059 0.66 0.680717
Target:  5'- --cCGCCCGACuucuuCA-CGAACUcggugccgcgcuugcUGCGCu -3'
miRNA:   3'- ggaGCGGGCUGu----GUgGCUUGA---------------ACGCG- -5'
28008 3' -55.1 NC_005887.1 + 26917 0.74 0.252531
Target:  5'- aCgUCGUCCGGUugACCGAACacguaUGCGCg -3'
miRNA:   3'- -GgAGCGGGCUGugUGGCUUGa----ACGCG- -5'
28008 3' -55.1 NC_005887.1 + 26734 0.66 0.676324
Target:  5'- ---aGCCCGGC-CGCCu-GC-UGCGCg -3'
miRNA:   3'- ggagCGGGCUGuGUGGcuUGaACGCG- -5'
28008 3' -55.1 NC_005887.1 + 26462 0.73 0.294383
Target:  5'- gCUgCGCgUCGAgCGCACCGAGCUgcuggUGCGCc -3'
miRNA:   3'- gGA-GCG-GGCU-GUGUGGCUUGA-----ACGCG- -5'
28008 3' -55.1 NC_005887.1 + 26333 0.66 0.676324
Target:  5'- gCCgUGgCCGGCGCugGCCGGG--UGCGCg -3'
miRNA:   3'- -GGaGCgGGCUGUG--UGGCUUgaACGCG- -5'
28008 3' -55.1 NC_005887.1 + 26197 0.72 0.324376
Target:  5'- gCUCGCgcacUCGGCGCGCCGGugguuggcgggguGgUUGCGCg -3'
miRNA:   3'- gGAGCG----GGCUGUGUGGCU-------------UgAACGCG- -5'
28008 3' -55.1 NC_005887.1 + 25091 0.73 0.300355
Target:  5'- gUCUCGCCCGGCACgaucuuauugacgccGCCGuacgcgaucGugucccacacgcccuGCUUGCGCg -3'
miRNA:   3'- -GGAGCGGGCUGUG---------------UGGC---------U---------------UGAACGCG- -5'
28008 3' -55.1 NC_005887.1 + 25013 0.68 0.555155
Target:  5'- gCUCGCgCCGGCGgcCGCCGGccaGCcgguaGCGCa -3'
miRNA:   3'- gGAGCG-GGCUGU--GUGGCU---UGaa---CGCG- -5'
28008 3' -55.1 NC_005887.1 + 24100 0.72 0.340619
Target:  5'- gCUCGCCCGugACggugcccggcgugGCCGAgGCgaucaccuucgUGCGCa -3'
miRNA:   3'- gGAGCGGGCugUG-------------UGGCU-UGa----------ACGCG- -5'
28008 3' -55.1 NC_005887.1 + 24008 0.67 0.629921
Target:  5'- -gUCGCCCGAacgucgcauguCGCCGA---UGCGCc -3'
miRNA:   3'- ggAGCGGGCUgu---------GUGGCUugaACGCG- -5'
28008 3' -55.1 NC_005887.1 + 23906 0.66 0.687293
Target:  5'- uCUUCGCCUGcgucgagauCGCGCCGAucagcgucguGCUgacgacgGCGCc -3'
miRNA:   3'- -GGAGCGGGCu--------GUGUGGCU----------UGAa------CGCG- -5'
28008 3' -55.1 NC_005887.1 + 23677 0.68 0.566032
Target:  5'- uCCggcgCGCgCGaACGCAUCGAAaUUGUGCu -3'
miRNA:   3'- -GGa---GCGgGC-UGUGUGGCUUgAACGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.