miRNA display CGI


Results 1 - 20 of 101 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28009 5' -59.7 NC_005887.1 + 10740 0.66 0.481202
Target:  5'- -aUGGCGACauGGAauCGGacuGGCGCGGCGGg -3'
miRNA:   3'- ccGCCGCUG--CCU--GCCg--CUGUGCUGCU- -5'
28009 5' -59.7 NC_005887.1 + 34298 0.66 0.481202
Target:  5'- uGCGGCugacuGCGGGCGGCaACGgGuaGCGAg -3'
miRNA:   3'- cCGCCGc----UGCCUGCCGcUGUgC--UGCU- -5'
28009 5' -59.7 NC_005887.1 + 17400 0.66 0.481202
Target:  5'- cGCuGGuCGAUcacGuCGGCGGCAUGGCGAa -3'
miRNA:   3'- cCG-CC-GCUGc--CuGCCGCUGUGCUGCU- -5'
28009 5' -59.7 NC_005887.1 + 11141 0.66 0.480216
Target:  5'- uGGCGGCGcauugaaAUGGACGuCGACACuGAg-- -3'
miRNA:   3'- -CCGCCGC-------UGCCUGCcGCUGUG-CUgcu -5'
28009 5' -59.7 NC_005887.1 + 21230 0.66 0.478246
Target:  5'- cGUGGCGuuGGcgagcaccguguuuGCGGCGAcCGCGcCGAu -3'
miRNA:   3'- cCGCCGCugCC--------------UGCCGCU-GUGCuGCU- -5'
28009 5' -59.7 NC_005887.1 + 39399 0.66 0.471384
Target:  5'- cGGCGaG-GAUGGucGCGGCGGugcCGCGGCGc -3'
miRNA:   3'- -CCGC-CgCUGCC--UGCCGCU---GUGCUGCu -5'
28009 5' -59.7 NC_005887.1 + 27405 0.66 0.471384
Target:  5'- uGCGGCGcguCGuACGGCagcGCGCGGCGu -3'
miRNA:   3'- cCGCCGCu--GCcUGCCGc--UGUGCUGCu -5'
28009 5' -59.7 NC_005887.1 + 9350 0.66 0.471384
Target:  5'- cGGCaccgGGCagGACGaauCGGCGACA-GACGAa -3'
miRNA:   3'- -CCG----CCG--CUGCcu-GCCGCUGUgCUGCU- -5'
28009 5' -59.7 NC_005887.1 + 11007 0.66 0.461669
Target:  5'- cGUGGgccaucgaCGACGGccCGGuCGGCACGugGGa -3'
miRNA:   3'- cCGCC--------GCUGCCu-GCC-GCUGUGCugCU- -5'
28009 5' -59.7 NC_005887.1 + 7574 0.66 0.45206
Target:  5'- uGGCaGGCGuaucCGGACGGCauCGCGuaaGCGGc -3'
miRNA:   3'- -CCG-CCGCu---GCCUGCCGcuGUGC---UGCU- -5'
28009 5' -59.7 NC_005887.1 + 26352 0.66 0.45206
Target:  5'- cGGCucGCGGCGGgucuGCGcGCG-CACGACa- -3'
miRNA:   3'- -CCGc-CGCUGCC----UGC-CGCuGUGCUGcu -5'
28009 5' -59.7 NC_005887.1 + 38635 0.66 0.442562
Target:  5'- cGCGGaucGCGGuCGGCG-CGCGGCu- -3'
miRNA:   3'- cCGCCgc-UGCCuGCCGCuGUGCUGcu -5'
28009 5' -59.7 NC_005887.1 + 15502 0.66 0.442562
Target:  5'- cGGCGGCaACGGcuacCGGCaGACGCGcCc- -3'
miRNA:   3'- -CCGCCGcUGCCu---GCCG-CUGUGCuGcu -5'
28009 5' -59.7 NC_005887.1 + 9208 0.66 0.442562
Target:  5'- cGCGGC-ACGGuCGGCugcuucuaccGACgcaACGGCGAg -3'
miRNA:   3'- cCGCCGcUGCCuGCCG----------CUG---UGCUGCU- -5'
28009 5' -59.7 NC_005887.1 + 15096 0.66 0.442562
Target:  5'- -uUGGCGacGCGGGcCGGCG-CGCGAUGc -3'
miRNA:   3'- ccGCCGC--UGCCU-GCCGCuGUGCUGCu -5'
28009 5' -59.7 NC_005887.1 + 26401 0.67 0.433178
Target:  5'- aGCGGCGuGCGG-CGcGUGGC-CGGCGc -3'
miRNA:   3'- cCGCCGC-UGCCuGC-CGCUGuGCUGCu -5'
28009 5' -59.7 NC_005887.1 + 25274 0.67 0.433178
Target:  5'- uGCGaGCGGuCGaGCaGCGGCAUGACGGc -3'
miRNA:   3'- cCGC-CGCU-GCcUGcCGCUGUGCUGCU- -5'
28009 5' -59.7 NC_005887.1 + 17158 0.67 0.433177
Target:  5'- cGGCgaagaucgcgaGGCGugGGAgCGcGCGAaCGCGGCc- -3'
miRNA:   3'- -CCG-----------CCGCugCCU-GC-CGCU-GUGCUGcu -5'
28009 5' -59.7 NC_005887.1 + 18323 0.67 0.42391
Target:  5'- cGCGGCacugggGGCGcauCGGCGACauGCGACGu -3'
miRNA:   3'- cCGCCG------CUGCcu-GCCGCUG--UGCUGCu -5'
28009 5' -59.7 NC_005887.1 + 15549 0.67 0.42391
Target:  5'- --gGGCGACGacuCGGCGcGCGCGACc- -3'
miRNA:   3'- ccgCCGCUGCcu-GCCGC-UGUGCUGcu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.