miRNA display CGI


Results 1 - 20 of 68 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28017 5' -57.5 NC_005887.1 + 37440 0.66 0.527861
Target:  5'- aGUGGAgCGCgGCGCuu--GcCUGCGCGg -3'
miRNA:   3'- gCACCU-GCG-CGUGuuguC-GACGCGCa -5'
28017 5' -57.5 NC_005887.1 + 17891 0.66 0.526792
Target:  5'- --cGGcCGCGC-CAACGGCcugaugcUGCGUGUc -3'
miRNA:   3'- gcaCCuGCGCGuGUUGUCG-------ACGCGCA- -5'
28017 5' -57.5 NC_005887.1 + 34915 0.66 0.524658
Target:  5'- ---cGACGCGCACGccagcccaaacgagGCGGCgGCGgGUg -3'
miRNA:   3'- gcacCUGCGCGUGU--------------UGUCGaCGCgCA- -5'
28017 5' -57.5 NC_005887.1 + 15909 0.66 0.517213
Target:  5'- aGUcGGAucuCGCGCgGCuGCAGC-GCGCGUu -3'
miRNA:   3'- gCA-CCU---GCGCG-UGuUGUCGaCGCGCA- -5'
28017 5' -57.5 NC_005887.1 + 11190 0.66 0.517213
Target:  5'- aGUGG-CGCGaCACGAUGGUgcaggcguaUGCGCa- -3'
miRNA:   3'- gCACCuGCGC-GUGUUGUCG---------ACGCGca -5'
28017 5' -57.5 NC_005887.1 + 28160 0.66 0.517213
Target:  5'- --aGGcCGCGCcCGACAGC-GCGUGc -3'
miRNA:   3'- gcaCCuGCGCGuGUUGUCGaCGCGCa -5'
28017 5' -57.5 NC_005887.1 + 42128 0.66 0.517213
Target:  5'- uGUGGcgauccugGCGCGCAUucgcagAGCAGCgGgGCGa -3'
miRNA:   3'- gCACC--------UGCGCGUG------UUGUCGaCgCGCa -5'
28017 5' -57.5 NC_005887.1 + 17621 0.66 0.517213
Target:  5'- -aUGGAaacgcUGCGCACGACGGUcaGCGcCGUg -3'
miRNA:   3'- gcACCU-----GCGCGUGUUGUCGa-CGC-GCA- -5'
28017 5' -57.5 NC_005887.1 + 18949 0.66 0.517213
Target:  5'- ---cGACGCGCuGCuGCGGCUGCcaGCGg -3'
miRNA:   3'- gcacCUGCGCG-UGuUGUCGACG--CGCa -5'
28017 5' -57.5 NC_005887.1 + 39165 0.66 0.517213
Target:  5'- uCGcUGucCGgGCGCGGCAGCUGCcCGa -3'
miRNA:   3'- -GC-ACcuGCgCGUGUUGUCGACGcGCa -5'
28017 5' -57.5 NC_005887.1 + 40689 0.66 0.506652
Target:  5'- -cUGG-CGCGCGCGcACGGCUG-GCa- -3'
miRNA:   3'- gcACCuGCGCGUGU-UGUCGACgCGca -5'
28017 5' -57.5 NC_005887.1 + 41816 0.66 0.496184
Target:  5'- --cGGcGCgGCGCGCGGCGGCcGaCGCGUu -3'
miRNA:   3'- gcaCC-UG-CGCGUGUUGUCGaC-GCGCA- -5'
28017 5' -57.5 NC_005887.1 + 4662 0.66 0.496184
Target:  5'- --aGcGACGCGCA-GACcGCUGCGCa- -3'
miRNA:   3'- gcaC-CUGCGCGUgUUGuCGACGCGca -5'
28017 5' -57.5 NC_005887.1 + 37097 0.66 0.496184
Target:  5'- --cGGGCGaGCACAGCcucGGCgaucGCGCGg -3'
miRNA:   3'- gcaCCUGCgCGUGUUG---UCGa---CGCGCa -5'
28017 5' -57.5 NC_005887.1 + 28451 0.66 0.485815
Target:  5'- aCGUGccacgaaugccGACGCGCACGAgccggUAGCU-CGCGa -3'
miRNA:   3'- -GCAC-----------CUGCGCGUGUU-----GUCGAcGCGCa -5'
28017 5' -57.5 NC_005887.1 + 14103 0.66 0.485815
Target:  5'- aGUGGugaaGCGCcgcucGCGA-AGCUGCGCGc -3'
miRNA:   3'- gCACCug--CGCG-----UGUUgUCGACGCGCa -5'
28017 5' -57.5 NC_005887.1 + 35200 0.66 0.485815
Target:  5'- aCGgcgGGGCGauucguuGCGCAGCAGCuugucggccUGCGUGg -3'
miRNA:   3'- -GCa--CCUGCg------CGUGUUGUCG---------ACGCGCa -5'
28017 5' -57.5 NC_005887.1 + 17043 0.66 0.47555
Target:  5'- --cGGAUGCGCAgCGGCAcGCUuGgGCGg -3'
miRNA:   3'- gcaCCUGCGCGU-GUUGU-CGA-CgCGCa -5'
28017 5' -57.5 NC_005887.1 + 23236 0.66 0.47555
Target:  5'- --cGGcACGCGaGCGGCGGCggucgGCGCGc -3'
miRNA:   3'- gcaCC-UGCGCgUGUUGUCGa----CGCGCa -5'
28017 5' -57.5 NC_005887.1 + 32753 0.66 0.474529
Target:  5'- gCGUGcgcgccGGCGCGCGCcauGCAGCcggcucgUGCGCa- -3'
miRNA:   3'- -GCAC------CUGCGCGUGu--UGUCG-------ACGCGca -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.