miRNA display CGI


Results 1 - 20 of 49 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28018 3' -58.7 NC_005887.1 + 35337 0.66 0.483925
Target:  5'- --cGCcGCggCGGCCgGCCACGagcuUCACg -3'
miRNA:   3'- ccaCGaCGa-GCCGGaCGGUGC----AGUGg -5'
28018 3' -58.7 NC_005887.1 + 18170 0.66 0.483925
Target:  5'- --aGCUGCUCGGCaUGauuCGCGaggaaggcgaguUCGCCg -3'
miRNA:   3'- ccaCGACGAGCCGgACg--GUGC------------AGUGG- -5'
28018 3' -58.7 NC_005887.1 + 33948 0.66 0.473828
Target:  5'- --gGC-GCUCGGCgaG-CACGUCGCg -3'
miRNA:   3'- ccaCGaCGAGCCGgaCgGUGCAGUGg -5'
28018 3' -58.7 NC_005887.1 + 29683 0.66 0.472824
Target:  5'- uGGcGCuUGCUUGGCagCUGCaCGCGcagccacUCGCCg -3'
miRNA:   3'- -CCaCG-ACGAGCCG--GACG-GUGC-------AGUGG- -5'
28018 3' -58.7 NC_005887.1 + 1582 0.66 0.463838
Target:  5'- --cGCcgGCUCGGCg-GCgCGCGgcgCGCCa -3'
miRNA:   3'- ccaCGa-CGAGCCGgaCG-GUGCa--GUGG- -5'
28018 3' -58.7 NC_005887.1 + 40849 0.66 0.453959
Target:  5'- cGUGUUccGCaCGGCCgcGCCGCGcgagCGCCg -3'
miRNA:   3'- cCACGA--CGaGCCGGa-CGGUGCa---GUGG- -5'
28018 3' -58.7 NC_005887.1 + 22427 0.66 0.452977
Target:  5'- cGUGCUGCUguucugcaugUGGaUUGCCGucacgaacguguuCGUCACCg -3'
miRNA:   3'- cCACGACGA----------GCCgGACGGU-------------GCAGUGG- -5'
28018 3' -58.7 NC_005887.1 + 680 0.66 0.452977
Target:  5'- aGGUGCUGCUgcucGCCgagucgaUGCUGC-UCGCCg -3'
miRNA:   3'- -CCACGACGAgc--CGG-------ACGGUGcAGUGG- -5'
28018 3' -58.7 NC_005887.1 + 41993 0.66 0.444196
Target:  5'- --aGCaGCaCGGCCUGCgGCccacgucgaguGUCGCCg -3'
miRNA:   3'- ccaCGaCGaGCCGGACGgUG-----------CAGUGG- -5'
28018 3' -58.7 NC_005887.1 + 18233 0.66 0.444196
Target:  5'- aGGUGaucGcCUCGGCCacGCCGgG-CACCg -3'
miRNA:   3'- -CCACga-C-GAGCCGGa-CGGUgCaGUGG- -5'
28018 3' -58.7 NC_005887.1 + 17724 0.66 0.440323
Target:  5'- aGGUGCcguucuucaagacGCUCGGCacgGCCGCGcggcugauggCGCCc -3'
miRNA:   3'- -CCACGa------------CGAGCCGga-CGGUGCa---------GUGG- -5'
28018 3' -58.7 NC_005887.1 + 24254 0.66 0.434551
Target:  5'- cGGUGUcagGUauUCGGCguccccauacUUGCCggGCGUCGCCu -3'
miRNA:   3'- -CCACGa--CG--AGCCG----------GACGG--UGCAGUGG- -5'
28018 3' -58.7 NC_005887.1 + 26482 0.66 0.434551
Target:  5'- --aGCUGCUggUGcGCCUGCUGCG-CGCg -3'
miRNA:   3'- ccaCGACGA--GC-CGGACGGUGCaGUGg -5'
28018 3' -58.7 NC_005887.1 + 35724 0.66 0.434551
Target:  5'- cGUGCaGCUCGGUC-GCgGuCGUgGCCc -3'
miRNA:   3'- cCACGaCGAGCCGGaCGgU-GCAgUGG- -5'
28018 3' -58.7 NC_005887.1 + 30732 0.67 0.425029
Target:  5'- --cGCUGCgUGGCCUucGCgACuUCGCCg -3'
miRNA:   3'- ccaCGACGaGCCGGA--CGgUGcAGUGG- -5'
28018 3' -58.7 NC_005887.1 + 39985 0.67 0.406365
Target:  5'- cGUGUcuucGUcgUCGGCCUGCgagcgCugGUCGCCc -3'
miRNA:   3'- cCACGa---CG--AGCCGGACG-----GugCAGUGG- -5'
28018 3' -58.7 NC_005887.1 + 23385 0.67 0.406365
Target:  5'- -uUGCUGCUC-GCgCUGCCGCuGgcaGCCu -3'
miRNA:   3'- ccACGACGAGcCG-GACGGUG-Cag-UGG- -5'
28018 3' -58.7 NC_005887.1 + 5344 0.67 0.397227
Target:  5'- cGUGUUcGCguaCGGCCUGCgCGUGcUCGCCg -3'
miRNA:   3'- cCACGA-CGa--GCCGGACG-GUGC-AGUGG- -5'
28018 3' -58.7 NC_005887.1 + 36833 0.67 0.388223
Target:  5'- cGUGcCUGCUgCGGCCggUGCUGCG--GCCg -3'
miRNA:   3'- cCAC-GACGA-GCCGG--ACGGUGCagUGG- -5'
28018 3' -58.7 NC_005887.1 + 39649 0.67 0.382886
Target:  5'- --cGCgGCUCGGCCgcuUGCCgcccguacgcuucacGCG-CACCa -3'
miRNA:   3'- ccaCGaCGAGCCGG---ACGG---------------UGCaGUGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.