Results 1 - 20 of 70 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value![]() |
Predicted miRNA align pattern | |||||||
28019 | 5' | -62.7 | NC_005887.1 | + | 2006 | 0.66 | 0.331296 |
Target: 5'- cCGCGcUCGaCGGCCaGUccauuUC-GGCGGCg -3' miRNA: 3'- aGCGC-AGCaGCCGGaCG-----AGcCCGCCG- -5' |
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28019 | 5' | -62.7 | NC_005887.1 | + | 39804 | 0.66 | 0.330523 |
Target: 5'- gCGCGUCGUCacuucGCaCUGCUggauaaagcgcgaCGGGCcGCc -3' miRNA: 3'- aGCGCAGCAGc----CG-GACGA-------------GCCCGcCG- -5' |
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28019 | 5' | -62.7 | NC_005887.1 | + | 24306 | 0.66 | 0.330523 |
Target: 5'- aUCGCccaaUCGUCGGCCgucaGUcCGGcgcgcguaagcgcGCGGCg -3' miRNA: 3'- -AGCGc---AGCAGCCGGa---CGaGCC-------------CGCCG- -5' |
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28019 | 5' | -62.7 | NC_005887.1 | + | 37761 | 0.66 | 0.323621 |
Target: 5'- gUUGCaucugCG-CGGCCUGCgccucGGCGGCu -3' miRNA: 3'- -AGCGca---GCaGCCGGACGagc--CCGCCG- -5' |
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28019 | 5' | -62.7 | NC_005887.1 | + | 37724 | 0.66 | 0.323621 |
Target: 5'- aUCGCGcCGgCGGCCaccgGCgcCGcGGCGaGCa -3' miRNA: 3'- -AGCGCaGCaGCCGGa---CGa-GC-CCGC-CG- -5' |
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28019 | 5' | -62.7 | NC_005887.1 | + | 7595 | 0.66 | 0.323621 |
Target: 5'- aUCGCGUaagCGGCgCcgGUUgaucgaUGGGCGGCg -3' miRNA: 3'- -AGCGCAgcaGCCG-Ga-CGA------GCCCGCCG- -5' |
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28019 | 5' | -62.7 | NC_005887.1 | + | 17684 | 0.66 | 0.316079 |
Target: 5'- -gGCGaCGUCGGCacgaUGUUCGugacGGcCGGCu -3' miRNA: 3'- agCGCaGCAGCCGg---ACGAGC----CC-GCCG- -5' |
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28019 | 5' | -62.7 | NC_005887.1 | + | 37056 | 0.66 | 0.307937 |
Target: 5'- -gGCGuagaacuUCGcCGcGCgCUGCUCGGGCGacuGCg -3' miRNA: 3'- agCGC-------AGCaGC-CG-GACGAGCCCGC---CG- -5' |
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28019 | 5' | -62.7 | NC_005887.1 | + | 7106 | 0.66 | 0.301395 |
Target: 5'- aUCGCG-CGU-GGUCUaacgagGCg-GGGCGGCg -3' miRNA: 3'- -AGCGCaGCAgCCGGA------CGagCCCGCCG- -5' |
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28019 | 5' | -62.7 | NC_005887.1 | + | 25125 | 0.66 | 0.294253 |
Target: 5'- aCGCGaUCGUgucccacaCGcCCUGCUUGcGCGGCg -3' miRNA: 3'- aGCGC-AGCA--------GCcGGACGAGCcCGCCG- -5' |
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28019 | 5' | -62.7 | NC_005887.1 | + | 5348 | 0.66 | 0.294253 |
Target: 5'- uUCGCGUa--CGGCCUGCgcgugcUCGccGGCGaGCu -3' miRNA: 3'- -AGCGCAgcaGCCGGACG------AGC--CCGC-CG- -5' |
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28019 | 5' | -62.7 | NC_005887.1 | + | 31169 | 0.66 | 0.294253 |
Target: 5'- aUCGUGUCG-C-GCCacuugUGCUCGGGCauGCg -3' miRNA: 3'- -AGCGCAGCaGcCGG-----ACGAGCCCGc-CG- -5' |
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28019 | 5' | -62.7 | NC_005887.1 | + | 28000 | 0.66 | 0.290031 |
Target: 5'- aUCGCGUCGUCGGCCgGCguuucuucaCGaauccacuucacugcGuCGGCg -3' miRNA: 3'- -AGCGCAGCAGCCGGaCGa--------GC---------------CcGCCG- -5' |
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28019 | 5' | -62.7 | NC_005887.1 | + | 34462 | 0.66 | 0.287243 |
Target: 5'- --uCGUCGcCGGCCUGCUCGu-CGGa -3' miRNA: 3'- agcGCAGCaGCCGGACGAGCccGCCg -5' |
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28019 | 5' | -62.7 | NC_005887.1 | + | 36861 | 0.66 | 0.287243 |
Target: 5'- aUCGCGaCG-CGcGCCUGUUCcuGGUGGUc -3' miRNA: 3'- -AGCGCaGCaGC-CGGACGAGc-CCGCCG- -5' |
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28019 | 5' | -62.7 | NC_005887.1 | + | 21061 | 0.67 | 0.27362 |
Target: 5'- --uCGUCGUCGGCgCcgGUgugGGGUGGCg -3' miRNA: 3'- agcGCAGCAGCCG-Ga-CGag-CCCGCCG- -5' |
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28019 | 5' | -62.7 | NC_005887.1 | + | 34961 | 0.67 | 0.27362 |
Target: 5'- gCGauCGUCGUCGGCgaGCUgaacGCGGCg -3' miRNA: 3'- aGC--GCAGCAGCCGgaCGAgcc-CGCCG- -5' |
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28019 | 5' | -62.7 | NC_005887.1 | + | 35215 | 0.67 | 0.272952 |
Target: 5'- gUUGCGcagcagcUUGUCGGCCUGCgUgGGGCu-- -3' miRNA: 3'- -AGCGC-------AGCAGCCGGACG-AgCCCGccg -5' |
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28019 | 5' | -62.7 | NC_005887.1 | + | 33714 | 0.67 | 0.267004 |
Target: 5'- gCGCGgcgGUCGaUCUGCUCGaucGCGGCg -3' miRNA: 3'- aGCGCag-CAGCcGGACGAGCc--CGCCG- -5' |
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28019 | 5' | -62.7 | NC_005887.1 | + | 36492 | 0.67 | 0.258599 |
Target: 5'- uUCGCGaUCaccggaaccgugcgGUCGaCCgcaGCaUCGGGCGGCg -3' miRNA: 3'- -AGCGC-AG--------------CAGCcGGa--CG-AGCCCGCCG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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