miRNA display CGI


Results 1 - 20 of 70 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28019 5' -62.7 NC_005887.1 + 2006 0.66 0.331296
Target:  5'- cCGCGcUCGaCGGCCaGUccauuUC-GGCGGCg -3'
miRNA:   3'- aGCGC-AGCaGCCGGaCG-----AGcCCGCCG- -5'
28019 5' -62.7 NC_005887.1 + 39804 0.66 0.330523
Target:  5'- gCGCGUCGUCacuucGCaCUGCUggauaaagcgcgaCGGGCcGCc -3'
miRNA:   3'- aGCGCAGCAGc----CG-GACGA-------------GCCCGcCG- -5'
28019 5' -62.7 NC_005887.1 + 24306 0.66 0.330523
Target:  5'- aUCGCccaaUCGUCGGCCgucaGUcCGGcgcgcguaagcgcGCGGCg -3'
miRNA:   3'- -AGCGc---AGCAGCCGGa---CGaGCC-------------CGCCG- -5'
28019 5' -62.7 NC_005887.1 + 37761 0.66 0.323621
Target:  5'- gUUGCaucugCG-CGGCCUGCgccucGGCGGCu -3'
miRNA:   3'- -AGCGca---GCaGCCGGACGagc--CCGCCG- -5'
28019 5' -62.7 NC_005887.1 + 37724 0.66 0.323621
Target:  5'- aUCGCGcCGgCGGCCaccgGCgcCGcGGCGaGCa -3'
miRNA:   3'- -AGCGCaGCaGCCGGa---CGa-GC-CCGC-CG- -5'
28019 5' -62.7 NC_005887.1 + 7595 0.66 0.323621
Target:  5'- aUCGCGUaagCGGCgCcgGUUgaucgaUGGGCGGCg -3'
miRNA:   3'- -AGCGCAgcaGCCG-Ga-CGA------GCCCGCCG- -5'
28019 5' -62.7 NC_005887.1 + 17684 0.66 0.316079
Target:  5'- -gGCGaCGUCGGCacgaUGUUCGugacGGcCGGCu -3'
miRNA:   3'- agCGCaGCAGCCGg---ACGAGC----CC-GCCG- -5'
28019 5' -62.7 NC_005887.1 + 37056 0.66 0.307937
Target:  5'- -gGCGuagaacuUCGcCGcGCgCUGCUCGGGCGacuGCg -3'
miRNA:   3'- agCGC-------AGCaGC-CG-GACGAGCCCGC---CG- -5'
28019 5' -62.7 NC_005887.1 + 7106 0.66 0.301395
Target:  5'- aUCGCG-CGU-GGUCUaacgagGCg-GGGCGGCg -3'
miRNA:   3'- -AGCGCaGCAgCCGGA------CGagCCCGCCG- -5'
28019 5' -62.7 NC_005887.1 + 25125 0.66 0.294253
Target:  5'- aCGCGaUCGUgucccacaCGcCCUGCUUGcGCGGCg -3'
miRNA:   3'- aGCGC-AGCA--------GCcGGACGAGCcCGCCG- -5'
28019 5' -62.7 NC_005887.1 + 5348 0.66 0.294253
Target:  5'- uUCGCGUa--CGGCCUGCgcgugcUCGccGGCGaGCu -3'
miRNA:   3'- -AGCGCAgcaGCCGGACG------AGC--CCGC-CG- -5'
28019 5' -62.7 NC_005887.1 + 31169 0.66 0.294253
Target:  5'- aUCGUGUCG-C-GCCacuugUGCUCGGGCauGCg -3'
miRNA:   3'- -AGCGCAGCaGcCGG-----ACGAGCCCGc-CG- -5'
28019 5' -62.7 NC_005887.1 + 28000 0.66 0.290031
Target:  5'- aUCGCGUCGUCGGCCgGCguuucuucaCGaauccacuucacugcGuCGGCg -3'
miRNA:   3'- -AGCGCAGCAGCCGGaCGa--------GC---------------CcGCCG- -5'
28019 5' -62.7 NC_005887.1 + 34462 0.66 0.287243
Target:  5'- --uCGUCGcCGGCCUGCUCGu-CGGa -3'
miRNA:   3'- agcGCAGCaGCCGGACGAGCccGCCg -5'
28019 5' -62.7 NC_005887.1 + 36861 0.66 0.287243
Target:  5'- aUCGCGaCG-CGcGCCUGUUCcuGGUGGUc -3'
miRNA:   3'- -AGCGCaGCaGC-CGGACGAGc-CCGCCG- -5'
28019 5' -62.7 NC_005887.1 + 21061 0.67 0.27362
Target:  5'- --uCGUCGUCGGCgCcgGUgugGGGUGGCg -3'
miRNA:   3'- agcGCAGCAGCCG-Ga-CGag-CCCGCCG- -5'
28019 5' -62.7 NC_005887.1 + 34961 0.67 0.27362
Target:  5'- gCGauCGUCGUCGGCgaGCUgaacGCGGCg -3'
miRNA:   3'- aGC--GCAGCAGCCGgaCGAgcc-CGCCG- -5'
28019 5' -62.7 NC_005887.1 + 35215 0.67 0.272952
Target:  5'- gUUGCGcagcagcUUGUCGGCCUGCgUgGGGCu-- -3'
miRNA:   3'- -AGCGC-------AGCAGCCGGACG-AgCCCGccg -5'
28019 5' -62.7 NC_005887.1 + 33714 0.67 0.267004
Target:  5'- gCGCGgcgGUCGaUCUGCUCGaucGCGGCg -3'
miRNA:   3'- aGCGCag-CAGCcGGACGAGCc--CGCCG- -5'
28019 5' -62.7 NC_005887.1 + 36492 0.67 0.258599
Target:  5'- uUCGCGaUCaccggaaccgugcgGUCGaCCgcaGCaUCGGGCGGCg -3'
miRNA:   3'- -AGCGC-AG--------------CAGCcGGa--CG-AGCCCGCCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.