miRNA display CGI


Results 1 - 20 of 73 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28028 5' -59 NC_005887.1 + 41805 0.66 0.471125
Target:  5'- cGCGCuGUaucCGGcgCGGCGCGcggcGGCCg -3'
miRNA:   3'- aCGCG-CAcc-GCCuaGCCGUGCa---UCGG- -5'
28028 5' -59 NC_005887.1 + 13611 0.66 0.471125
Target:  5'- cGCuGC-UGGCaGcgCGGCGCGcggcGGCCg -3'
miRNA:   3'- aCG-CGcACCGcCuaGCCGUGCa---UCGG- -5'
28028 5' -59 NC_005887.1 + 6814 0.66 0.461192
Target:  5'- cUGCGCGacUGGCGcuacgUGGCGCG-GGUCu -3'
miRNA:   3'- -ACGCGC--ACCGCcua--GCCGUGCaUCGG- -5'
28028 5' -59 NC_005887.1 + 35333 0.66 0.461192
Target:  5'- cGCGCGccgcGGCGGc-CGGCcACG-AGCUu -3'
miRNA:   3'- aCGCGCa---CCGCCuaGCCG-UGCaUCGG- -5'
28028 5' -59 NC_005887.1 + 31386 0.66 0.461192
Target:  5'- cGCGCucGGCGuagCGGUGCGU-GCCg -3'
miRNA:   3'- aCGCGcaCCGCcuaGCCGUGCAuCGG- -5'
28028 5' -59 NC_005887.1 + 23241 0.66 0.461192
Target:  5'- cGCGaGcGGCGGcgGUCGGCGCGcaaaaGGCg -3'
miRNA:   3'- aCGCgCaCCGCC--UAGCCGUGCa----UCGg -5'
28028 5' -59 NC_005887.1 + 10118 0.66 0.45137
Target:  5'- cGCgGCaggcaaagGUGGCGGGUuugaugacgagCGGCACcucUGGCCg -3'
miRNA:   3'- aCG-CG--------CACCGCCUA-----------GCCGUGc--AUCGG- -5'
28028 5' -59 NC_005887.1 + 7744 0.66 0.45137
Target:  5'- aGCGCGaaaaagGGCGagguGAUCGGCAaggauaacaAGCCg -3'
miRNA:   3'- aCGCGCa-----CCGC----CUAGCCGUgca------UCGG- -5'
28028 5' -59 NC_005887.1 + 7442 0.66 0.45137
Target:  5'- gGCGC-UGGCGugcgcgucguGAUCGGCAU---GCCg -3'
miRNA:   3'- aCGCGcACCGC----------CUAGCCGUGcauCGG- -5'
28028 5' -59 NC_005887.1 + 27256 0.66 0.447474
Target:  5'- cGCGCGccGGCccgcgucgccaauGAUCGGCACGacuuccauGCCg -3'
miRNA:   3'- aCGCGCa-CCGc------------CUAGCCGUGCau------CGG- -5'
28028 5' -59 NC_005887.1 + 12148 0.66 0.441665
Target:  5'- cGCGCGccagauUGGUGacGAUCGcGUgACGUGGCUg -3'
miRNA:   3'- aCGCGC------ACCGC--CUAGC-CG-UGCAUCGG- -5'
28028 5' -59 NC_005887.1 + 7014 0.66 0.441665
Target:  5'- aGCuCGUGGcCGGccgccgCGGCGCGcGGCa -3'
miRNA:   3'- aCGcGCACC-GCCua----GCCGUGCaUCGg -5'
28028 5' -59 NC_005887.1 + 29763 0.66 0.432079
Target:  5'- aGCGuCGcGGcCGGGUCGGCggacaccauGCGcauGCCg -3'
miRNA:   3'- aCGC-GCaCC-GCCUAGCCG---------UGCau-CGG- -5'
28028 5' -59 NC_005887.1 + 17522 0.66 0.432079
Target:  5'- aUGCGCacgcucgagGGCGGcaugacgucgGUCGGCGCGUA-CUg -3'
miRNA:   3'- -ACGCGca-------CCGCC----------UAGCCGUGCAUcGG- -5'
28028 5' -59 NC_005887.1 + 19189 0.66 0.432079
Target:  5'- gGCGCG-GGCguGGAgacaggCGGCGCGguuacgacgAGCg -3'
miRNA:   3'- aCGCGCaCCG--CCUa-----GCCGUGCa--------UCGg -5'
28028 5' -59 NC_005887.1 + 14652 0.66 0.429226
Target:  5'- aGUGCuacgcGGCGaGGUaCGGCACGUgaugcagacgaucaAGCCg -3'
miRNA:   3'- aCGCGca---CCGC-CUA-GCCGUGCA--------------UCGG- -5'
28028 5' -59 NC_005887.1 + 31009 0.66 0.422615
Target:  5'- -uCGCGUGGCG---CGGCGCa-GGCCa -3'
miRNA:   3'- acGCGCACCGCcuaGCCGUGcaUCGG- -5'
28028 5' -59 NC_005887.1 + 1488 0.66 0.422615
Target:  5'- gGCGUGcGGCGcucGcgCGGCGCG--GCCg -3'
miRNA:   3'- aCGCGCaCCGC---CuaGCCGUGCauCGG- -5'
28028 5' -59 NC_005887.1 + 39431 0.66 0.421675
Target:  5'- uUGCGCagcuUGGCGG--CGGCGuCGUucgcggcGGCCg -3'
miRNA:   3'- -ACGCGc---ACCGCCuaGCCGU-GCA-------UCGG- -5'
28028 5' -59 NC_005887.1 + 30525 0.67 0.413276
Target:  5'- -cCGCGUaGGCGGccGUCGGC-CGagacGCCa -3'
miRNA:   3'- acGCGCA-CCGCC--UAGCCGuGCau--CGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.