miRNA display CGI


Results 1 - 20 of 85 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28030 3' -57 NC_005887.1 + 41235 0.66 0.566032
Target:  5'- -aGCUCGAcaagcacacGCaccuGCUCGGCG-UCGGCa -3'
miRNA:   3'- caCGAGCU---------CGc---UGAGCCGCuAGUCGg -5'
28030 3' -57 NC_005887.1 + 29758 0.66 0.566032
Target:  5'- -cGC-CGAGCGuCgCGGCcgGGUCGGCg -3'
miRNA:   3'- caCGaGCUCGCuGaGCCG--CUAGUCGg -5'
28030 3' -57 NC_005887.1 + 40053 0.66 0.566032
Target:  5'- -aGCcCGGGUaGAuCUCGGCGAgguGCCg -3'
miRNA:   3'- caCGaGCUCG-CU-GAGCCGCUaguCGG- -5'
28030 3' -57 NC_005887.1 + 32171 0.66 0.566032
Target:  5'- cUGCaggUCG-GCG-CUCaGCGAUgAGCCa -3'
miRNA:   3'- cACG---AGCuCGCuGAGcCGCUAgUCGG- -5'
28030 3' -57 NC_005887.1 + 17679 0.66 0.555155
Target:  5'- -cGCUUG-GCGACgUCGGCacGAUguucgugaCGGCCg -3'
miRNA:   3'- caCGAGCuCGCUG-AGCCG--CUA--------GUCGG- -5'
28030 3' -57 NC_005887.1 + 40238 0.66 0.555155
Target:  5'- cGUGC-CGAGCGA--CGGCu-UCGGCa -3'
miRNA:   3'- -CACGaGCUCGCUgaGCCGcuAGUCGg -5'
28030 3' -57 NC_005887.1 + 12889 0.66 0.555155
Target:  5'- cGUGCgCGAGCugaucGGCaCGGCGAgccagCAcGCCg -3'
miRNA:   3'- -CACGaGCUCG-----CUGaGCCGCUa----GU-CGG- -5'
28030 3' -57 NC_005887.1 + 5378 0.66 0.55407
Target:  5'- cUGCUCGAaggcgaagccagcGCGACcggugaacCGGCGggCGGCg -3'
miRNA:   3'- cACGAGCU-------------CGCUGa-------GCCGCuaGUCGg -5'
28030 3' -57 NC_005887.1 + 41923 0.66 0.54434
Target:  5'- cGUGCU-GAGCGGCUCGcaGCuGAgCuGCCc -3'
miRNA:   3'- -CACGAgCUCGCUGAGC--CG-CUaGuCGG- -5'
28030 3' -57 NC_005887.1 + 11549 0.66 0.54434
Target:  5'- -aGCUCGGcGCGcaGCgcgCGGCGGUC-GCg -3'
miRNA:   3'- caCGAGCU-CGC--UGa--GCCGCUAGuCGg -5'
28030 3' -57 NC_005887.1 + 17455 0.66 0.54434
Target:  5'- cUGCUgcgaagaagacCGAGCG-CgCGGC-AUCGGCCg -3'
miRNA:   3'- cACGA-----------GCUCGCuGaGCCGcUAGUCGG- -5'
28030 3' -57 NC_005887.1 + 6143 0.66 0.543262
Target:  5'- cGUGCUCGAcGcCGAaucguucCUCGGCacggugaucccGGUCGGCa -3'
miRNA:   3'- -CACGAGCU-C-GCU-------GAGCCG-----------CUAGUCGg -5'
28030 3' -57 NC_005887.1 + 1406 0.66 0.533594
Target:  5'- -cGgUCGAGCaugcGCUCGGCGuu--GCCg -3'
miRNA:   3'- caCgAGCUCGc---UGAGCCGCuaguCGG- -5'
28030 3' -57 NC_005887.1 + 11063 0.66 0.533594
Target:  5'- aUGCcggUCGAGCucGACgaGGCGAUCgacgcGGCCg -3'
miRNA:   3'- cACG---AGCUCG--CUGagCCGCUAG-----UCGG- -5'
28030 3' -57 NC_005887.1 + 19344 0.66 0.533594
Target:  5'- -cGcCUCGcagaAGCGAC-CGGCgucGAUCAGCg -3'
miRNA:   3'- caC-GAGC----UCGCUGaGCCG---CUAGUCGg -5'
28030 3' -57 NC_005887.1 + 40019 0.66 0.533594
Target:  5'- gGUGCgcaucaUGGcGCGGCUCgaGGCGGcCGGCCu -3'
miRNA:   3'- -CACGa-----GCU-CGCUGAG--CCGCUaGUCGG- -5'
28030 3' -57 NC_005887.1 + 803 0.66 0.533594
Target:  5'- -aGCUCGcgaucGCGaucaacagccauGCUCGcGCGAUCgcGGCCg -3'
miRNA:   3'- caCGAGCu----CGC------------UGAGC-CGCUAG--UCGG- -5'
28030 3' -57 NC_005887.1 + 28707 0.66 0.533594
Target:  5'- cUGCacgUCGGuGCuGCUCGGCuGAgugCGGCCg -3'
miRNA:   3'- cACG---AGCU-CGcUGAGCCG-CUa--GUCGG- -5'
28030 3' -57 NC_005887.1 + 15429 0.66 0.522924
Target:  5'- -gGUUCGucgacggcggccAGCGACUCGG-GcgCAGCUu -3'
miRNA:   3'- caCGAGC------------UCGCUGAGCCgCuaGUCGG- -5'
28030 3' -57 NC_005887.1 + 30934 0.66 0.522924
Target:  5'- uGUGC-C-AGCGcGCUCGGCGGugaugUCGGCg -3'
miRNA:   3'- -CACGaGcUCGC-UGAGCCGCU-----AGUCGg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.