miRNA display CGI


Results 1 - 20 of 60 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28031 5' -60 NC_005887.1 + 20545 0.66 0.423706
Target:  5'- cCCGGC-AGCgCCGCGgaCGUCGUGUugaugccgGCGa -3'
miRNA:   3'- cGGCCGcUCG-GGCGC--GUAGUACA--------CGC- -5'
28031 5' -60 NC_005887.1 + 2321 0.66 0.423706
Target:  5'- gGCCGGCcgccucGAG-CCGCGC--CAUGaUGCGc -3'
miRNA:   3'- -CGGCCG------CUCgGGCGCGuaGUAC-ACGC- -5'
28031 5' -60 NC_005887.1 + 9608 0.66 0.423706
Target:  5'- cGCCGGCgcgcacgcGAGCgCCGCGCuaccccgcCGUGgGUGa -3'
miRNA:   3'- -CGGCCG--------CUCG-GGCGCGua------GUACaCGC- -5'
28031 5' -60 NC_005887.1 + 33048 0.66 0.423706
Target:  5'- cGUCGGCGuuucgguGCCCGUaaccugcgGCGUCGccGUGCc -3'
miRNA:   3'- -CGGCCGCu------CGGGCG--------CGUAGUa-CACGc -5'
28031 5' -60 NC_005887.1 + 4630 0.66 0.423706
Target:  5'- cGCCGGUGGccGCCgGCGCgAUCAaGgaucucaGCGa -3'
miRNA:   3'- -CGGCCGCU--CGGgCGCG-UAGUaCa------CGC- -5'
28031 5' -60 NC_005887.1 + 14473 0.66 0.423706
Target:  5'- cGUCGuGuCGGGCCuCGCGCAgaUCGUGcccgccGCGg -3'
miRNA:   3'- -CGGC-C-GCUCGG-GCGCGU--AGUACa-----CGC- -5'
28031 5' -60 NC_005887.1 + 25028 0.66 0.414392
Target:  5'- cGCCGGCcAGCCgguaGCGCAgaaccCAUGccGCa -3'
miRNA:   3'- -CGGCCGcUCGGg---CGCGUa----GUACa-CGc -5'
28031 5' -60 NC_005887.1 + 30143 0.66 0.414392
Target:  5'- uCCGGCGcGCCCGgCGCggCGcUGUccuucGCGg -3'
miRNA:   3'- cGGCCGCuCGGGC-GCGuaGU-ACA-----CGC- -5'
28031 5' -60 NC_005887.1 + 23677 0.66 0.405204
Target:  5'- uCCGGCGcGCgCGaaCGCAUCGaaauUGUGCu -3'
miRNA:   3'- cGGCCGCuCGgGC--GCGUAGU----ACACGc -5'
28031 5' -60 NC_005887.1 + 13371 0.66 0.405204
Target:  5'- cCCGGCGAuggcGCUCGCGCugaaggCcgGcGCGg -3'
miRNA:   3'- cGGCCGCU----CGGGCGCGua----GuaCaCGC- -5'
28031 5' -60 NC_005887.1 + 40778 0.66 0.405204
Target:  5'- cGCCGcCGAGCCgGCGgucgagguUCGUGgcgGCGa -3'
miRNA:   3'- -CGGCcGCUCGGgCGCgu------AGUACa--CGC- -5'
28031 5' -60 NC_005887.1 + 5371 0.66 0.405204
Target:  5'- cGCCGGCGAGCucgacCCGCGCGa-------- -3'
miRNA:   3'- -CGGCCGCUCG-----GGCGCGUaguacacgc -5'
28031 5' -60 NC_005887.1 + 31146 0.66 0.405204
Target:  5'- gGCCGuGCGcauacGCCUGCacCAUCGUGUcGCGc -3'
miRNA:   3'- -CGGC-CGCu----CGGGCGc-GUAGUACA-CGC- -5'
28031 5' -60 NC_005887.1 + 27984 0.66 0.405204
Target:  5'- cGCCGGCucGGGCCgaauCGCGuCGUCGgccgGCGu -3'
miRNA:   3'- -CGGCCG--CUCGG----GCGC-GUAGUaca-CGC- -5'
28031 5' -60 NC_005887.1 + 17396 0.66 0.396146
Target:  5'- gGCCGcGCGcaaggcGGCCCGCGCG-CAccgcGUcGCGa -3'
miRNA:   3'- -CGGC-CGC------UCGGGCGCGUaGUa---CA-CGC- -5'
28031 5' -60 NC_005887.1 + 7439 0.66 0.396146
Target:  5'- uUUGGCGcuGGCgUGCGCGUCGUGaucgGCa -3'
miRNA:   3'- cGGCCGC--UCGgGCGCGUAGUACa---CGc -5'
28031 5' -60 NC_005887.1 + 2496 0.66 0.396146
Target:  5'- -aCGGCGAGCCCG-GCcugcucGUGCa -3'
miRNA:   3'- cgGCCGCUCGGGCgCGuagua-CACGc -5'
28031 5' -60 NC_005887.1 + 27364 0.66 0.38722
Target:  5'- cGCCuGCG-GCCUGCGCggCcUGcGCGg -3'
miRNA:   3'- -CGGcCGCuCGGGCGCGuaGuACaCGC- -5'
28031 5' -60 NC_005887.1 + 29830 0.66 0.378427
Target:  5'- uGUCGGCGAGCuUCGC-CuUCGUcUGCGg -3'
miRNA:   3'- -CGGCCGCUCG-GGCGcGuAGUAcACGC- -5'
28031 5' -60 NC_005887.1 + 40859 0.67 0.368054
Target:  5'- aCCGGCGAagccGCCgCGCGCGUCGaagaagaaacGCGa -3'
miRNA:   3'- cGGCCGCU----CGG-GCGCGUAGUaca-------CGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.