Results 1 - 20 of 60 are showing below:
Show page:
<< Previous Page | Next Page >>
ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value![]() |
Predicted miRNA align pattern | |||||||
28031 | 5' | -60 | NC_005887.1 | + | 20545 | 0.66 | 0.423706 |
Target: 5'- cCCGGC-AGCgCCGCGgaCGUCGUGUugaugccgGCGa -3' miRNA: 3'- cGGCCGcUCG-GGCGC--GUAGUACA--------CGC- -5' |
|||||||
28031 | 5' | -60 | NC_005887.1 | + | 2321 | 0.66 | 0.423706 |
Target: 5'- gGCCGGCcgccucGAG-CCGCGC--CAUGaUGCGc -3' miRNA: 3'- -CGGCCG------CUCgGGCGCGuaGUAC-ACGC- -5' |
|||||||
28031 | 5' | -60 | NC_005887.1 | + | 9608 | 0.66 | 0.423706 |
Target: 5'- cGCCGGCgcgcacgcGAGCgCCGCGCuaccccgcCGUGgGUGa -3' miRNA: 3'- -CGGCCG--------CUCG-GGCGCGua------GUACaCGC- -5' |
|||||||
28031 | 5' | -60 | NC_005887.1 | + | 33048 | 0.66 | 0.423706 |
Target: 5'- cGUCGGCGuuucgguGCCCGUaaccugcgGCGUCGccGUGCc -3' miRNA: 3'- -CGGCCGCu------CGGGCG--------CGUAGUa-CACGc -5' |
|||||||
28031 | 5' | -60 | NC_005887.1 | + | 4630 | 0.66 | 0.423706 |
Target: 5'- cGCCGGUGGccGCCgGCGCgAUCAaGgaucucaGCGa -3' miRNA: 3'- -CGGCCGCU--CGGgCGCG-UAGUaCa------CGC- -5' |
|||||||
28031 | 5' | -60 | NC_005887.1 | + | 14473 | 0.66 | 0.423706 |
Target: 5'- cGUCGuGuCGGGCCuCGCGCAgaUCGUGcccgccGCGg -3' miRNA: 3'- -CGGC-C-GCUCGG-GCGCGU--AGUACa-----CGC- -5' |
|||||||
28031 | 5' | -60 | NC_005887.1 | + | 25028 | 0.66 | 0.414392 |
Target: 5'- cGCCGGCcAGCCgguaGCGCAgaaccCAUGccGCa -3' miRNA: 3'- -CGGCCGcUCGGg---CGCGUa----GUACa-CGc -5' |
|||||||
28031 | 5' | -60 | NC_005887.1 | + | 30143 | 0.66 | 0.414392 |
Target: 5'- uCCGGCGcGCCCGgCGCggCGcUGUccuucGCGg -3' miRNA: 3'- cGGCCGCuCGGGC-GCGuaGU-ACA-----CGC- -5' |
|||||||
28031 | 5' | -60 | NC_005887.1 | + | 23677 | 0.66 | 0.405204 |
Target: 5'- uCCGGCGcGCgCGaaCGCAUCGaaauUGUGCu -3' miRNA: 3'- cGGCCGCuCGgGC--GCGUAGU----ACACGc -5' |
|||||||
28031 | 5' | -60 | NC_005887.1 | + | 13371 | 0.66 | 0.405204 |
Target: 5'- cCCGGCGAuggcGCUCGCGCugaaggCcgGcGCGg -3' miRNA: 3'- cGGCCGCU----CGGGCGCGua----GuaCaCGC- -5' |
|||||||
28031 | 5' | -60 | NC_005887.1 | + | 40778 | 0.66 | 0.405204 |
Target: 5'- cGCCGcCGAGCCgGCGgucgagguUCGUGgcgGCGa -3' miRNA: 3'- -CGGCcGCUCGGgCGCgu------AGUACa--CGC- -5' |
|||||||
28031 | 5' | -60 | NC_005887.1 | + | 5371 | 0.66 | 0.405204 |
Target: 5'- cGCCGGCGAGCucgacCCGCGCGa-------- -3' miRNA: 3'- -CGGCCGCUCG-----GGCGCGUaguacacgc -5' |
|||||||
28031 | 5' | -60 | NC_005887.1 | + | 31146 | 0.66 | 0.405204 |
Target: 5'- gGCCGuGCGcauacGCCUGCacCAUCGUGUcGCGc -3' miRNA: 3'- -CGGC-CGCu----CGGGCGc-GUAGUACA-CGC- -5' |
|||||||
28031 | 5' | -60 | NC_005887.1 | + | 27984 | 0.66 | 0.405204 |
Target: 5'- cGCCGGCucGGGCCgaauCGCGuCGUCGgccgGCGu -3' miRNA: 3'- -CGGCCG--CUCGG----GCGC-GUAGUaca-CGC- -5' |
|||||||
28031 | 5' | -60 | NC_005887.1 | + | 17396 | 0.66 | 0.396146 |
Target: 5'- gGCCGcGCGcaaggcGGCCCGCGCG-CAccgcGUcGCGa -3' miRNA: 3'- -CGGC-CGC------UCGGGCGCGUaGUa---CA-CGC- -5' |
|||||||
28031 | 5' | -60 | NC_005887.1 | + | 7439 | 0.66 | 0.396146 |
Target: 5'- uUUGGCGcuGGCgUGCGCGUCGUGaucgGCa -3' miRNA: 3'- cGGCCGC--UCGgGCGCGUAGUACa---CGc -5' |
|||||||
28031 | 5' | -60 | NC_005887.1 | + | 2496 | 0.66 | 0.396146 |
Target: 5'- -aCGGCGAGCCCG-GCcugcucGUGCa -3' miRNA: 3'- cgGCCGCUCGGGCgCGuagua-CACGc -5' |
|||||||
28031 | 5' | -60 | NC_005887.1 | + | 27364 | 0.66 | 0.38722 |
Target: 5'- cGCCuGCG-GCCUGCGCggCcUGcGCGg -3' miRNA: 3'- -CGGcCGCuCGGGCGCGuaGuACaCGC- -5' |
|||||||
28031 | 5' | -60 | NC_005887.1 | + | 29830 | 0.66 | 0.378427 |
Target: 5'- uGUCGGCGAGCuUCGC-CuUCGUcUGCGg -3' miRNA: 3'- -CGGCCGCUCG-GGCGcGuAGUAcACGC- -5' |
|||||||
28031 | 5' | -60 | NC_005887.1 | + | 40859 | 0.67 | 0.368054 |
Target: 5'- aCCGGCGAagccGCCgCGCGCGUCGaagaagaaacGCGa -3' miRNA: 3'- cGGCCGCU----CGG-GCGCGUAGUaca-------CGC- -5' |
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home