miRNA display CGI


Results 1 - 20 of 132 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28036 3' -61.1 NC_005887.1 + 32332 0.66 0.411878
Target:  5'- -gACCaCACGCCGaUGCCGGCGAaGAa -3'
miRNA:   3'- ggUGGgGUGUGGCcGCGGCUGCUgCU- -5'
28036 3' -61.1 NC_005887.1 + 35061 0.66 0.411877
Target:  5'- aCACgacgaCCCACagcgggcgGCCGGgGCCGAUGucGCGGu -3'
miRNA:   3'- gGUG-----GGGUG--------UGGCCgCGGCUGC--UGCU- -5'
28036 3' -61.1 NC_005887.1 + 19887 0.66 0.411877
Target:  5'- -uGCCCCACcaACCGGUGaCGAacacguucgUGACGGc -3'
miRNA:   3'- ggUGGGGUG--UGGCCGCgGCU---------GCUGCU- -5'
28036 3' -61.1 NC_005887.1 + 17766 0.66 0.411877
Target:  5'- gCCGCgaaCCCAUGCgcaGGUgugaaGCUGACGGCGAu -3'
miRNA:   3'- -GGUG---GGGUGUGg--CCG-----CGGCUGCUGCU- -5'
28036 3' -61.1 NC_005887.1 + 31127 0.66 0.410979
Target:  5'- uCgACCgUAUAuuuCCGGCGCacgccuuCGGCGACGAa -3'
miRNA:   3'- -GgUGGgGUGU---GGCCGCG-------GCUGCUGCU- -5'
28036 3' -61.1 NC_005887.1 + 770 0.66 0.409185
Target:  5'- gCCGCCgCugGCCgacaggaacgucucGGCGCUGGCuGACu- -3'
miRNA:   3'- -GGUGGgGugUGG--------------CCGCGGCUG-CUGcu -5'
28036 3' -61.1 NC_005887.1 + 2953 0.66 0.402945
Target:  5'- gCACCgCCGCgACCauccuCGCCGGCGACu- -3'
miRNA:   3'- gGUGG-GGUG-UGGcc---GCGGCUGCUGcu -5'
28036 3' -61.1 NC_005887.1 + 26003 0.66 0.402945
Target:  5'- -aGCUUCACgGgCGGCGUCGGgGGCGAg -3'
miRNA:   3'- ggUGGGGUG-UgGCCGCGGCUgCUGCU- -5'
28036 3' -61.1 NC_005887.1 + 32404 0.66 0.402945
Target:  5'- aUACUCCuuucgucgACgugGCCGGCggcgaugugGCCGGCGGCGAu -3'
miRNA:   3'- gGUGGGG--------UG---UGGCCG---------CGGCUGCUGCU- -5'
28036 3' -61.1 NC_005887.1 + 32165 0.66 0.394137
Target:  5'- aCACCaCUGCAggUCGGCGCUcaGCGAUGAg -3'
miRNA:   3'- gGUGG-GGUGU--GGCCGCGGc-UGCUGCU- -5'
28036 3' -61.1 NC_005887.1 + 15377 0.66 0.394136
Target:  5'- cUCACCggCACACCGuCGCCGaACGGCc- -3'
miRNA:   3'- -GGUGGg-GUGUGGCcGCGGC-UGCUGcu -5'
28036 3' -61.1 NC_005887.1 + 27267 0.66 0.393262
Target:  5'- aUCAUCUgcgaCACGCCGGCGgcucccuUCGGCGACa- -3'
miRNA:   3'- -GGUGGG----GUGUGGCCGC-------GGCUGCUGcu -5'
28036 3' -61.1 NC_005887.1 + 12618 0.66 0.391518
Target:  5'- -gACCgugCACGCgCGGCGCgugauccugcgacgCGACGGCGAg -3'
miRNA:   3'- ggUGGg--GUGUG-GCCGCG--------------GCUGCUGCU- -5'
28036 3' -61.1 NC_005887.1 + 26959 0.66 0.388911
Target:  5'- gCugCCCGCGCgcgaucagcgCGGCGUCGAccugcucgggcgucaCGugGAa -3'
miRNA:   3'- gGugGGGUGUG----------GCCGCGGCU---------------GCugCU- -5'
28036 3' -61.1 NC_005887.1 + 19469 0.66 0.388911
Target:  5'- gCCACCagcgCGCgaggaucugauagcgGCCGGCgGCCGuCGAUGGu -3'
miRNA:   3'- -GGUGGg---GUG---------------UGGCCG-CGGCuGCUGCU- -5'
28036 3' -61.1 NC_005887.1 + 41781 0.66 0.388911
Target:  5'- aUCGCCCauCugGCCGGCGgucuucgcgcuguauCCGGCG-CGGc -3'
miRNA:   3'- -GGUGGG--GugUGGCCGC---------------GGCUGCuGCU- -5'
28036 3' -61.1 NC_005887.1 + 26219 0.66 0.385454
Target:  5'- gCCGgCCUGCAgCUGGCGCaCGGguccgauccgcuCGACGAu -3'
miRNA:   3'- -GGUgGGGUGU-GGCCGCG-GCU------------GCUGCU- -5'
28036 3' -61.1 NC_005887.1 + 11312 0.66 0.385454
Target:  5'- cCgGCUCgGCAgCGaGCGCCGcaaccGCGACGGc -3'
miRNA:   3'- -GgUGGGgUGUgGC-CGCGGC-----UGCUGCU- -5'
28036 3' -61.1 NC_005887.1 + 10555 0.66 0.385454
Target:  5'- gCAgCUCaACGCCGGCGCCGcaaACGGg -3'
miRNA:   3'- gGUgGGG-UGUGGCCGCGGCugcUGCU- -5'
28036 3' -61.1 NC_005887.1 + 19568 0.66 0.385453
Target:  5'- aCAgCggCCGCGCCGGCGUCGAgcCaACGAg -3'
miRNA:   3'- gGUgG--GGUGUGGCCGCGGCU--GcUGCU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.