miRNA display CGI


Results 21 - 40 of 55 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28041 5' -51.4 NC_005887.1 + 27854 0.7 0.660597
Target:  5'- aCCACCAagcACCGc-GGCGGGCACGaUCu -3'
miRNA:   3'- -GGUGGU---UGGCcaCUGCUUGUGCaAGc -5'
28041 5' -51.4 NC_005887.1 + 19890 1.11 0.001724
Target:  5'- cCCACCAACCGGUGACGAACACGUUCGu -3'
miRNA:   3'- -GGUGGUUGGCCACUGCUUGUGCAAGC- -5'
28041 5' -51.4 NC_005887.1 + 6526 0.68 0.769691
Target:  5'- aCGCCGACgCGGcGcACGAggaacacaGCGCGUUCu -3'
miRNA:   3'- gGUGGUUG-GCCaC-UGCU--------UGUGCAAGc -5'
28041 5' -51.4 NC_005887.1 + 6286 0.69 0.716237
Target:  5'- aCAUCGACgGcGUGcGCGAGCGCG-UCGa -3'
miRNA:   3'- gGUGGUUGgC-CAC-UGCUUGUGCaAGC- -5'
28041 5' -51.4 NC_005887.1 + 40782 0.71 0.593014
Target:  5'- cCCACCGGCCcaGGUcGcCGAACAUG-UCGa -3'
miRNA:   3'- -GGUGGUUGG--CCA-CuGCUUGUGCaAGC- -5'
28041 5' -51.4 NC_005887.1 + 32424 0.68 0.790116
Target:  5'- gCUugCGGCCGGccuucUGcACGAACAUGaUCGu -3'
miRNA:   3'- -GGugGUUGGCC-----AC-UGCUUGUGCaAGC- -5'
28041 5' -51.4 NC_005887.1 + 33939 0.66 0.887804
Target:  5'- cCUGCCGACgGcGcucGGCGAGCACGUcgCGu -3'
miRNA:   3'- -GGUGGUUGgC-Ca--CUGCUUGUGCAa-GC- -5'
28041 5' -51.4 NC_005887.1 + 28166 0.68 0.779984
Target:  5'- aCGCCGACUGGUcGuCGAGCAacaUCGg -3'
miRNA:   3'- gGUGGUUGGCCA-CuGCUUGUgcaAGC- -5'
28041 5' -51.4 NC_005887.1 + 42064 0.73 0.505106
Target:  5'- cUCGCCGACUGGaucGACGAGCGCugUCGc -3'
miRNA:   3'- -GGUGGUUGGCCa--CUGCUUGUGcaAGC- -5'
28041 5' -51.4 NC_005887.1 + 17568 0.68 0.779984
Target:  5'- aCUACgUGACCGGcgcGACGAACACGcccgUCa -3'
miRNA:   3'- -GGUG-GUUGGCCa--CUGCUUGUGCa---AGc -5'
28041 5' -51.4 NC_005887.1 + 22470 0.68 0.779984
Target:  5'- gUCACCGGuuGGUG--GGGCACGcUCGg -3'
miRNA:   3'- -GGUGGUUggCCACugCUUGUGCaAGC- -5'
28041 5' -51.4 NC_005887.1 + 39396 0.66 0.86402
Target:  5'- gCgGCgCAACCguGGUcGCGAcCGCGUUCGg -3'
miRNA:   3'- -GgUG-GUUGG--CCAcUGCUuGUGCAAGC- -5'
28041 5' -51.4 NC_005887.1 + 9895 0.71 0.626784
Target:  5'- --uCCAGCCGGUGcaggucggcggcACGAuCAUGUUCGu -3'
miRNA:   3'- gguGGUUGGCCAC------------UGCUuGUGCAAGC- -5'
28041 5' -51.4 NC_005887.1 + 21019 0.66 0.872212
Target:  5'- cCCGCCGGcucaacguCCGGUcaGGCGAucgucucgACAgGUUCGu -3'
miRNA:   3'- -GGUGGUU--------GGCCA--CUGCU--------UGUgCAAGC- -5'
28041 5' -51.4 NC_005887.1 + 1817 0.66 0.880142
Target:  5'- gCCGCCGACCuGGUacggcaucuucGGCG-ACACGaaCGc -3'
miRNA:   3'- -GGUGGUUGG-CCA-----------CUGCuUGUGCaaGC- -5'
28041 5' -51.4 NC_005887.1 + 40779 0.66 0.88705
Target:  5'- gCCGCCgAGCCGGcggucgagguucgUGGCGGcgACGCGccgcUCGa -3'
miRNA:   3'- -GGUGG-UUGGCC-------------ACUGCU--UGUGCa---AGC- -5'
28041 5' -51.4 NC_005887.1 + 39490 0.71 0.604248
Target:  5'- gCCGCUGGCCaGGcUGACGAACugGaagUUCa -3'
miRNA:   3'- -GGUGGUUGG-CC-ACUGCUUGugC---AAGc -5'
28041 5' -51.4 NC_005887.1 + 21941 0.66 0.887804
Target:  5'- uCUGCCaAGCCGGUuuggaACGAGCACGa--- -3'
miRNA:   3'- -GGUGG-UUGGCCAc----UGCUUGUGCaagc -5'
28041 5' -51.4 NC_005887.1 + 16152 0.66 0.895192
Target:  5'- aCCACCGgcgcGCCGaGUGcGCGAGCGa--UCGa -3'
miRNA:   3'- -GGUGGU----UGGC-CAC-UGCUUGUgcaAGC- -5'
28041 5' -51.4 NC_005887.1 + 9628 0.66 0.895192
Target:  5'- -uGCgCGACCGGUGGCu--CGCGaugUCGg -3'
miRNA:   3'- ggUG-GUUGGCCACUGcuuGUGCa--AGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.