miRNA display CGI


Results 1 - 20 of 91 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28045 5' -51.8 NC_005887.1 + 7578 0.66 0.828462
Target:  5'- aGGCGUAUcCGGACGGCaucgcguaaGCGGCGCc -3'
miRNA:   3'- -UCGCGUA-GUUUGCCGaac------CGUUGUGc -5'
28045 5' -51.8 NC_005887.1 + 27974 0.66 0.828462
Target:  5'- cGCGCGcCGAGCGGCgacucgaacaGGUgcccGGCACGc -3'
miRNA:   3'- uCGCGUaGUUUGCCGaa--------CCG----UUGUGC- -5'
28045 5' -51.8 NC_005887.1 + 29660 0.66 0.827507
Target:  5'- cGCGCGgcgCGAgguagcacagcugGCGcuuGCUUGGCAgcuGCACGc -3'
miRNA:   3'- uCGCGUa--GUU-------------UGC---CGAACCGU---UGUGC- -5'
28045 5' -51.8 NC_005887.1 + 33712 0.66 0.827507
Target:  5'- uGGCGCGgcggucgaucugcUCGAucGCGGCgaGGauCAGCGCGc -3'
miRNA:   3'- -UCGCGU-------------AGUU--UGCCGaaCC--GUUGUGC- -5'
28045 5' -51.8 NC_005887.1 + 26872 0.66 0.818817
Target:  5'- cGCGCGgccagcUCGAACGcGuCUUGGUG-CGCGg -3'
miRNA:   3'- uCGCGU------AGUUUGC-C-GAACCGUuGUGC- -5'
28045 5' -51.8 NC_005887.1 + 22823 0.66 0.818816
Target:  5'- cGGCGCAUcCGAACGuGCUcaaccGGCAGaucuCGg -3'
miRNA:   3'- -UCGCGUA-GUUUGC-CGAa----CCGUUgu--GC- -5'
28045 5' -51.8 NC_005887.1 + 28376 0.66 0.808953
Target:  5'- -aCGCGUC-GACGGCUUcGCGGCuguCGa -3'
miRNA:   3'- ucGCGUAGuUUGCCGAAcCGUUGu--GC- -5'
28045 5' -51.8 NC_005887.1 + 15158 0.66 0.808953
Target:  5'- aGGCGC-UC-GACGGCaUGGCGAagUACc -3'
miRNA:   3'- -UCGCGuAGuUUGCCGaACCGUU--GUGc -5'
28045 5' -51.8 NC_005887.1 + 32674 0.66 0.808953
Target:  5'- cGCGCGU---GCGcGCUUcGGCAAcCGCGu -3'
miRNA:   3'- uCGCGUAguuUGC-CGAA-CCGUU-GUGC- -5'
28045 5' -51.8 NC_005887.1 + 18767 0.66 0.802936
Target:  5'- cAGCGCGUCGuAGucgcguucgcacugcCGGCc-GGCGAUGCGg -3'
miRNA:   3'- -UCGCGUAGU-UU---------------GCCGaaCCGUUGUGC- -5'
28045 5' -51.8 NC_005887.1 + 6966 0.66 0.798885
Target:  5'- gGGCGCAUCGAGCaugaGCUgugcaGGCc-CGCGu -3'
miRNA:   3'- -UCGCGUAGUUUGc---CGAa----CCGuuGUGC- -5'
28045 5' -51.8 NC_005887.1 + 2207 0.66 0.798884
Target:  5'- cAGCGCAaacCGAugGGCggcUGGC-GCAUc -3'
miRNA:   3'- -UCGCGUa--GUUugCCGa--ACCGuUGUGc -5'
28045 5' -51.8 NC_005887.1 + 25493 0.66 0.798884
Target:  5'- cAGCgGCGgcUCGGacgauggcGCGGCgggUGGCGGCAUa -3'
miRNA:   3'- -UCG-CGU--AGUU--------UGCCGa--ACCGUUGUGc -5'
28045 5' -51.8 NC_005887.1 + 11895 0.66 0.788622
Target:  5'- cAGCGCcggCAAcuucACGGCggGGCu-CACGu -3'
miRNA:   3'- -UCGCGua-GUU----UGCCGaaCCGuuGUGC- -5'
28045 5' -51.8 NC_005887.1 + 17398 0.66 0.788622
Target:  5'- cGCGCugGUCGAucacguCGGC--GGCAugGCGa -3'
miRNA:   3'- uCGCG--UAGUUu-----GCCGaaCCGUugUGC- -5'
28045 5' -51.8 NC_005887.1 + 27338 0.66 0.788622
Target:  5'- cAGCGCGagcaucagcUCGGGCGGCacgccugcGGCcuGCGCGg -3'
miRNA:   3'- -UCGCGU---------AGUUUGCCGaa------CCGu-UGUGC- -5'
28045 5' -51.8 NC_005887.1 + 32418 0.66 0.778179
Target:  5'- cGCGCAgCuuGCGGCc-GGCcuucuGCACGa -3'
miRNA:   3'- uCGCGUaGuuUGCCGaaCCGu----UGUGC- -5'
28045 5' -51.8 NC_005887.1 + 7108 0.66 0.778179
Target:  5'- cGCGCGUgGucuAACgaGGCggGGCGGCGCu -3'
miRNA:   3'- uCGCGUAgU---UUG--CCGaaCCGUUGUGc -5'
28045 5' -51.8 NC_005887.1 + 16950 0.66 0.778179
Target:  5'- gAGCGCuUCAAccgcGCGGC--GGCAAUgucgGCGa -3'
miRNA:   3'- -UCGCGuAGUU----UGCCGaaCCGUUG----UGC- -5'
28045 5' -51.8 NC_005887.1 + 27527 0.66 0.778179
Target:  5'- -aCGCggCGGGCGGUcaugGGCGGCGCu -3'
miRNA:   3'- ucGCGuaGUUUGCCGaa--CCGUUGUGc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.