miRNA display CGI


Results 1 - 20 of 160 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28048 3' -60 NC_005887.1 + 28208 0.66 0.428947
Target:  5'- --cAGCGCCGCGCGucucGGCgGUuuUGagcaGCGCg -3'
miRNA:   3'- acuUUGCGGCGCGC----CCGgCG--AC----UGCG- -5'
28048 3' -60 NC_005887.1 + 10089 0.66 0.428947
Target:  5'- ----cCGUCGUGUGGGCgGCccGCGCc -3'
miRNA:   3'- acuuuGCGGCGCGCCCGgCGacUGCG- -5'
28048 3' -60 NC_005887.1 + 746 0.66 0.428947
Target:  5'- -----gGCCGCGCcGGCCGC---CGCa -3'
miRNA:   3'- acuuugCGGCGCGcCCGGCGacuGCG- -5'
28048 3' -60 NC_005887.1 + 28141 0.66 0.428947
Target:  5'- cGcgGCGCCGCccugucCGaGGCCGCgcccGACaGCg -3'
miRNA:   3'- aCuuUGCGGCGc-----GC-CCGGCGa---CUG-CG- -5'
28048 3' -60 NC_005887.1 + 26403 0.66 0.428947
Target:  5'- cGGcgUGCgGCGCGuGGCCG---GCGCa -3'
miRNA:   3'- aCUuuGCGgCGCGC-CCGGCgacUGCG- -5'
28048 3' -60 NC_005887.1 + 9622 0.66 0.428947
Target:  5'- -cGAGCGCCGCGCuaccccGCCGUgggUGAacCGCg -3'
miRNA:   3'- acUUUGCGGCGCGcc----CGGCG---ACU--GCG- -5'
28048 3' -60 NC_005887.1 + 2693 0.66 0.428947
Target:  5'- gUGAAGCGUaCGgGCGGcaagcggccgaGCCGCgcgacgacggacUGACGUa -3'
miRNA:   3'- -ACUUUGCG-GCgCGCC-----------CGGCG------------ACUGCG- -5'
28048 3' -60 NC_005887.1 + 22650 0.66 0.423314
Target:  5'- gGAcAACGUgGCGCGcauugauauugcaucGGCCGgUgGGCGCa -3'
miRNA:   3'- aCU-UUGCGgCGCGC---------------CCGGCgA-CUGCG- -5'
28048 3' -60 NC_005887.1 + 14559 0.66 0.419582
Target:  5'- ----uCGCCuGCGuCGGcGCCGUcgucaUGGCGCu -3'
miRNA:   3'- acuuuGCGG-CGC-GCC-CGGCG-----ACUGCG- -5'
28048 3' -60 NC_005887.1 + 35917 0.66 0.419582
Target:  5'- cGGAAUGCCGCGUGuuGCCGUUcaGAUcgGCc -3'
miRNA:   3'- aCUUUGCGGCGCGCc-CGGCGA--CUG--CG- -5'
28048 3' -60 NC_005887.1 + 23930 0.66 0.418653
Target:  5'- cGAucAGCGUCGUGCugacgacGGcGCCGC-GGCGUa -3'
miRNA:   3'- aCU--UUGCGGCGCG-------CC-CGGCGaCUGCG- -5'
28048 3' -60 NC_005887.1 + 14827 0.66 0.410343
Target:  5'- cGcGACGCUGaugGCGGGCacguuCGCgGGCGUg -3'
miRNA:   3'- aCuUUGCGGCg--CGCCCG-----GCGaCUGCG- -5'
28048 3' -60 NC_005887.1 + 455 0.66 0.410343
Target:  5'- cUGgcGCGUgugGUGCGGGCaugagcaaGCUGACcGCa -3'
miRNA:   3'- -ACuuUGCGg--CGCGCCCGg-------CGACUG-CG- -5'
28048 3' -60 NC_005887.1 + 11715 0.66 0.410343
Target:  5'- aGAucgcuuCGCCGCGCGcacGGCgCGCacgaaUGcACGCa -3'
miRNA:   3'- aCUuu----GCGGCGCGC---CCG-GCG-----AC-UGCG- -5'
28048 3' -60 NC_005887.1 + 15614 0.66 0.410343
Target:  5'- -cGGGCGUCGCGCagcaggcggccGGGCuCGCcgaucagGGCGCc -3'
miRNA:   3'- acUUUGCGGCGCG-----------CCCG-GCGa------CUGCG- -5'
28048 3' -60 NC_005887.1 + 20520 0.66 0.410343
Target:  5'- uUGAAugGCCguuucauucgGCGCGcccggcagcGCCGCgGACGUc -3'
miRNA:   3'- -ACUUugCGG----------CGCGCc--------CGGCGaCUGCG- -5'
28048 3' -60 NC_005887.1 + 33483 0.66 0.409426
Target:  5'- --cGGCGUCGCGaucucgaCGGGCgCGCcGGCGUu -3'
miRNA:   3'- acuUUGCGGCGC-------GCCCG-GCGaCUGCG- -5'
28048 3' -60 NC_005887.1 + 13557 0.66 0.409426
Target:  5'- cGAuGCGCUGCcgcccgaGCaGGCCGaC-GACGCg -3'
miRNA:   3'- aCUuUGCGGCG-------CGcCCGGC-GaCUGCG- -5'
28048 3' -60 NC_005887.1 + 27661 0.66 0.40123
Target:  5'- cUGAGcUGCCGCGCGcGCgGCUuGAuCGUc -3'
miRNA:   3'- -ACUUuGCGGCGCGCcCGgCGA-CU-GCG- -5'
28048 3' -60 NC_005887.1 + 39825 0.66 0.40123
Target:  5'- cUGGAuaaaG-CGCGaCGGGCCGCcGuCGCa -3'
miRNA:   3'- -ACUUug--CgGCGC-GCCCGGCGaCuGCG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.