miRNA display CGI


Results 1 - 20 of 49 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28048 5' -56.7 NC_005887.1 + 11220 0.66 0.537538
Target:  5'- -cGCACgGCC-UGCCcgGCAagcuCGCCCUg -3'
miRNA:   3'- cuCGUGgUGGuACGG--UGUau--GCGGGA- -5'
28048 5' -56.7 NC_005887.1 + 19076 0.66 0.526641
Target:  5'- cGGGCugCGgCAaccGCCACGagcUGCGCCUUu -3'
miRNA:   3'- -CUCGugGUgGUa--CGGUGU---AUGCGGGA- -5'
28048 5' -56.7 NC_005887.1 + 12933 0.66 0.526641
Target:  5'- cGAGCGCguCCcUGCCGCAgcaaGCCg- -3'
miRNA:   3'- -CUCGUGguGGuACGGUGUaug-CGGga -5'
28048 5' -56.7 NC_005887.1 + 23159 0.66 0.515828
Target:  5'- -cGCGCCGCC-UGUCucc-ACGCCCg -3'
miRNA:   3'- cuCGUGGUGGuACGGuguaUGCGGGa -5'
28048 5' -56.7 NC_005887.1 + 19259 0.66 0.515828
Target:  5'- -uGUACCGCUugGUGCCGCcgACGCa-- -3'
miRNA:   3'- cuCGUGGUGG--UACGGUGuaUGCGgga -5'
28048 5' -56.7 NC_005887.1 + 14021 0.66 0.515828
Target:  5'- -cGCaACCGCCGgcgcGCCGCcgGCGCagCCUg -3'
miRNA:   3'- cuCG-UGGUGGUa---CGGUGuaUGCG--GGA- -5'
28048 5' -56.7 NC_005887.1 + 40856 0.66 0.494481
Target:  5'- -cGCACgGCCGcGCCGCGcgaGCGCCg- -3'
miRNA:   3'- cuCGUGgUGGUaCGGUGUa--UGCGGga -5'
28048 5' -56.7 NC_005887.1 + 30923 0.66 0.494481
Target:  5'- cGGCAUCGCCuuGUGCCAgc-GCGCUCg -3'
miRNA:   3'- cUCGUGGUGG--UACGGUguaUGCGGGa -5'
28048 5' -56.7 NC_005887.1 + 36238 0.67 0.483959
Target:  5'- aGGCACCACUucGCCAgcuCGUGCGCggCCg -3'
miRNA:   3'- cUCGUGGUGGuaCGGU---GUAUGCG--GGa -5'
28048 5' -56.7 NC_005887.1 + 12685 0.67 0.473545
Target:  5'- aAGCGCCAgCUGUGCUACcucGCGCCg- -3'
miRNA:   3'- cUCGUGGU-GGUACGGUGua-UGCGGga -5'
28048 5' -56.7 NC_005887.1 + 25284 0.67 0.473545
Target:  5'- cGAGCAgCGgCAUGaCgGCGUcCGCCCa -3'
miRNA:   3'- -CUCGUgGUgGUAC-GgUGUAuGCGGGa -5'
28048 5' -56.7 NC_005887.1 + 1812 0.67 0.47251
Target:  5'- cGAGCGCCagACCGucgucgcUGCCGC--GCGCCg- -3'
miRNA:   3'- -CUCGUGG--UGGU-------ACGGUGuaUGCGGga -5'
28048 5' -56.7 NC_005887.1 + 24532 0.67 0.463246
Target:  5'- aAGCAUCACgCGcgGCCGCAccuucggccggGCGCCCa -3'
miRNA:   3'- cUCGUGGUG-GUa-CGGUGUa----------UGCGGGa -5'
28048 5' -56.7 NC_005887.1 + 23374 0.67 0.463246
Target:  5'- -uGCGCCAUgcUGCCGCGU--GCCCUu -3'
miRNA:   3'- cuCGUGGUGguACGGUGUAugCGGGA- -5'
28048 5' -56.7 NC_005887.1 + 33792 0.67 0.463246
Target:  5'- cGGUGCUGCCuu-CgGCAUGCGCCCUc -3'
miRNA:   3'- cUCGUGGUGGuacGgUGUAUGCGGGA- -5'
28048 5' -56.7 NC_005887.1 + 26471 0.67 0.463246
Target:  5'- cGAGCG-CACCGaGCUGCugGUGCGCCUg -3'
miRNA:   3'- -CUCGUgGUGGUaCGGUG--UAUGCGGGa -5'
28048 5' -56.7 NC_005887.1 + 34763 0.67 0.453065
Target:  5'- cGGCGCCGCUuacgcgAUGCCGuCcggAUACGCCUg -3'
miRNA:   3'- cUCGUGGUGG------UACGGU-G---UAUGCGGGa -5'
28048 5' -56.7 NC_005887.1 + 8657 0.67 0.453065
Target:  5'- -cGCGCCAcgaaaaaccaauCCGgaGCCugAUAUGCCCg -3'
miRNA:   3'- cuCGUGGU------------GGUa-CGGugUAUGCGGGa -5'
28048 5' -56.7 NC_005887.1 + 25152 0.67 0.453065
Target:  5'- -uGCGCgGCgCAacauUGCCGCGUGCGgCCg -3'
miRNA:   3'- cuCGUGgUG-GU----ACGGUGUAUGCgGGa -5'
28048 5' -56.7 NC_005887.1 + 28929 0.67 0.450034
Target:  5'- -uGCGCCGCuCGucgcagcagcggcuUGCCGCcgACGUCCg -3'
miRNA:   3'- cuCGUGGUG-GU--------------ACGGUGuaUGCGGGa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.