miRNA display CGI


Results 1 - 20 of 103 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28052 5' -58.3 NC_005887.1 + 5502 0.66 0.516681
Target:  5'- -cGGCCgcagCACCGGCcgcaGCACCG--GCCGc -3'
miRNA:   3'- acUUGGa---GUGGCCG----UGUGGCagCGGC- -5'
28052 5' -58.3 NC_005887.1 + 27086 0.66 0.516681
Target:  5'- cGGACgCUCGCCGcgcaGCACugCGgcuGCCu -3'
miRNA:   3'- aCUUG-GAGUGGC----CGUGugGCag-CGGc -5'
28052 5' -58.3 NC_005887.1 + 8857 0.66 0.516681
Target:  5'- gUGAAC---GCCGGCGCGCCcGUcgagaucgcgaCGCCGu -3'
miRNA:   3'- -ACUUGgagUGGCCGUGUGG-CA-----------GCGGC- -5'
28052 5' -58.3 NC_005887.1 + 9517 0.66 0.514594
Target:  5'- cGAACaccgucgucacgCUCACCGGCACcuacaaaugggcCCGaUCGCUGu -3'
miRNA:   3'- aCUUG------------GAGUGGCCGUGu-----------GGC-AGCGGC- -5'
28052 5' -58.3 NC_005887.1 + 5956 0.66 0.506285
Target:  5'- aUGAACCagacCACCauCGCgGCCGUCGUCGa -3'
miRNA:   3'- -ACUUGGa---GUGGccGUG-UGGCAGCGGC- -5'
28052 5' -58.3 NC_005887.1 + 26843 0.66 0.495979
Target:  5'- cGGGCgCgUCuGCCGGUA-GCCGUUGCCGc -3'
miRNA:   3'- aCUUG-G-AG-UGGCCGUgUGGCAGCGGC- -5'
28052 5' -58.3 NC_005887.1 + 17286 0.66 0.495979
Target:  5'- cGGGCggCGCCGcGCGCGCaaaCGCCGg -3'
miRNA:   3'- aCUUGgaGUGGC-CGUGUGgcaGCGGC- -5'
28052 5' -58.3 NC_005887.1 + 6464 0.66 0.495979
Target:  5'- -cGACCUgaagUACgGGCGCGgCGUCGCgGu -3'
miRNA:   3'- acUUGGA----GUGgCCGUGUgGCAGCGgC- -5'
28052 5' -58.3 NC_005887.1 + 41436 0.66 0.489841
Target:  5'- aGcGCCUCGugggcuaugcgcugcUCGGCACGCCG-CGCg- -3'
miRNA:   3'- aCuUGGAGU---------------GGCCGUGUGGCaGCGgc -5'
28052 5' -58.3 NC_005887.1 + 13297 0.66 0.488822
Target:  5'- cUGAACCagAUCGGCcaggcguucggcaACGCCGgccgcaucgcggaucUCGCCGc -3'
miRNA:   3'- -ACUUGGagUGGCCG-------------UGUGGC---------------AGCGGC- -5'
28052 5' -58.3 NC_005887.1 + 30792 0.66 0.485769
Target:  5'- cGAuuCCgcgacCGCCGcGCGCugCG-CGCCGa -3'
miRNA:   3'- aCUu-GGa----GUGGC-CGUGugGCaGCGGC- -5'
28052 5' -58.3 NC_005887.1 + 40497 0.66 0.485769
Target:  5'- aGAACCaguggUCcgaguCCGGCGCGuucgUGUCGCCGa -3'
miRNA:   3'- aCUUGG-----AGu----GGCCGUGUg---GCAGCGGC- -5'
28052 5' -58.3 NC_005887.1 + 8103 0.66 0.485769
Target:  5'- cGcAgCUCGCCGcGCuCGCCGaggCGCCGc -3'
miRNA:   3'- aCuUgGAGUGGC-CGuGUGGCa--GCGGC- -5'
28052 5' -58.3 NC_005887.1 + 13406 0.66 0.485769
Target:  5'- cGGACgUCGgCGGCAaGCCGcUGCUGa -3'
miRNA:   3'- aCUUGgAGUgGCCGUgUGGCaGCGGC- -5'
28052 5' -58.3 NC_005887.1 + 21013 0.66 0.483739
Target:  5'- uUGAACCcCGCCGGCucaacguccggucagGCGaucgucucgacagguUCGUCGUCGg -3'
miRNA:   3'- -ACUUGGaGUGGCCG---------------UGU---------------GGCAGCGGC- -5'
28052 5' -58.3 NC_005887.1 + 34626 0.66 0.482726
Target:  5'- -cAGCCauUCGCCguucgcgucgacgaGGCGCGCCGgcUUGCCGg -3'
miRNA:   3'- acUUGG--AGUGG--------------CCGUGUGGC--AGCGGC- -5'
28052 5' -58.3 NC_005887.1 + 19561 0.66 0.475661
Target:  5'- gUGAACaaCAgCGGcCGCGCCGgCGUCGa -3'
miRNA:   3'- -ACUUGgaGUgGCC-GUGUGGCaGCGGC- -5'
28052 5' -58.3 NC_005887.1 + 5365 0.66 0.475661
Target:  5'- -cGugCUCGCCGGCGagcucgaccCGCgCGaCGCCGa -3'
miRNA:   3'- acUugGAGUGGCCGU---------GUG-GCaGCGGC- -5'
28052 5' -58.3 NC_005887.1 + 18105 0.66 0.475661
Target:  5'- cGAauACCUgaCACCGGaCGCGCUGUaCGCa- -3'
miRNA:   3'- aCU--UGGA--GUGGCC-GUGUGGCA-GCGgc -5'
28052 5' -58.3 NC_005887.1 + 37777 0.67 0.455765
Target:  5'- cUGcGCCUCGgCGGCuuGCUG-CGCCu -3'
miRNA:   3'- -ACuUGGAGUgGCCGugUGGCaGCGGc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.