miRNA display CGI


Results 1 - 20 of 232 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28053 3' -60.4 NC_005887.1 + 34044 0.66 0.428667
Target:  5'- gCGCGuccaucGCGUUCGGauCGGUgacGCGCuUCGCGUa -3'
miRNA:   3'- -GUGC------UGCGAGCU--GCCG---CGCG-AGCGCG- -5'
28053 3' -60.4 NC_005887.1 + 22748 0.66 0.428667
Target:  5'- uCGCGAaguCGgaCGACGGCuacaacGUGCUCGUugGCu -3'
miRNA:   3'- -GUGCU---GCgaGCUGCCG------CGCGAGCG--CG- -5'
28053 3' -60.4 NC_005887.1 + 33153 0.66 0.428667
Target:  5'- -cCGAcCGUgccgCGGCGGUGC-UUCGUGCa -3'
miRNA:   3'- guGCU-GCGa---GCUGCCGCGcGAGCGCG- -5'
28053 3' -60.4 NC_005887.1 + 41436 0.66 0.428667
Target:  5'- aGCG-C-CUCGugGGCuauGCGCUgcucggcacgcCGCGCg -3'
miRNA:   3'- gUGCuGcGAGCugCCG---CGCGA-----------GCGCG- -5'
28053 3' -60.4 NC_005887.1 + 12505 0.66 0.428667
Target:  5'- aGCGGCGCUgGAUccgcagacgaaGGCGaaGCUCGC-Cg -3'
miRNA:   3'- gUGCUGCGAgCUG-----------CCGCg-CGAGCGcG- -5'
28053 3' -60.4 NC_005887.1 + 25494 0.66 0.428667
Target:  5'- aGCGGCgGCUCGGacgaUGGCGCGg-CGgGUg -3'
miRNA:   3'- gUGCUG-CGAGCU----GCCGCGCgaGCgCG- -5'
28053 3' -60.4 NC_005887.1 + 2338 0.66 0.428667
Target:  5'- cUAUGGCGaucCGGCGGgcgaccaGCGCUCGCa- -3'
miRNA:   3'- -GUGCUGCga-GCUGCCg------CGCGAGCGcg -5'
28053 3' -60.4 NC_005887.1 + 38853 0.66 0.428667
Target:  5'- gACGAUGCccuugcCGACGuCGUGCUCgaucaucaGCGCg -3'
miRNA:   3'- gUGCUGCGa-----GCUGCcGCGCGAG--------CGCG- -5'
28053 3' -60.4 NC_005887.1 + 34446 0.66 0.428667
Target:  5'- aGCGGuCGcCUCGAaguCGucuucguucGCGCgGCUCGCGCc -3'
miRNA:   3'- gUGCU-GC-GAGCU---GC---------CGCG-CGAGCGCG- -5'
28053 3' -60.4 NC_005887.1 + 19355 0.66 0.428667
Target:  5'- aGCGACcgGCgUCGaucaGCGGCaacGCGCcaugcUCGCGCa -3'
miRNA:   3'- gUGCUG--CG-AGC----UGCCG---CGCG-----AGCGCG- -5'
28053 3' -60.4 NC_005887.1 + 40658 0.66 0.428667
Target:  5'- cCGCGcagcuuGCGCUCGugcuCGGgGCGaucgaGCGCg -3'
miRNA:   3'- -GUGC------UGCGAGCu---GCCgCGCgag--CGCG- -5'
28053 3' -60.4 NC_005887.1 + 26714 0.66 0.427736
Target:  5'- aCACGGCGCccugaUCGGCGaGCccggccgccugcuGCGCgacgcccgUGCGCu -3'
miRNA:   3'- -GUGCUGCG-----AGCUGC-CG-------------CGCGa-------GCGCG- -5'
28053 3' -60.4 NC_005887.1 + 28772 0.66 0.427736
Target:  5'- aCGCGGCcuccuucGCgUCGuCGGCcUGCUCGgGCg -3'
miRNA:   3'- -GUGCUG-------CG-AGCuGCCGcGCGAGCgCG- -5'
28053 3' -60.4 NC_005887.1 + 529 0.66 0.419407
Target:  5'- -cUGaACGCgUCGGCcgccGCGCGC-CGCGCc -3'
miRNA:   3'- guGC-UGCG-AGCUGc---CGCGCGaGCGCG- -5'
28053 3' -60.4 NC_005887.1 + 9624 0.66 0.419407
Target:  5'- -cUGAUGCgCGAcCGGUG-GCUCGCGa -3'
miRNA:   3'- guGCUGCGaGCU-GCCGCgCGAGCGCg -5'
28053 3' -60.4 NC_005887.1 + 13400 0.66 0.419407
Target:  5'- gCGCGGCGgacgUCGGCGGCaaGC-CGCuGCu -3'
miRNA:   3'- -GUGCUGCg---AGCUGCCGcgCGaGCG-CG- -5'
28053 3' -60.4 NC_005887.1 + 4114 0.66 0.419407
Target:  5'- -uCGAgCGCUCGAccauccCGGCcacGCGCaaggcugCGCGCg -3'
miRNA:   3'- guGCU-GCGAGCU------GCCG---CGCGa------GCGCG- -5'
28053 3' -60.4 NC_005887.1 + 28409 0.66 0.419407
Target:  5'- nCACGuCGCagcCGAgCGcGCGCaggcGCUCGUGCu -3'
miRNA:   3'- -GUGCuGCGa--GCU-GC-CGCG----CGAGCGCG- -5'
28053 3' -60.4 NC_005887.1 + 4891 0.66 0.419407
Target:  5'- gACGAUGgUCGccgagggcCGGCGCGagguguUCGUGCg -3'
miRNA:   3'- gUGCUGCgAGCu-------GCCGCGCg-----AGCGCG- -5'
28053 3' -60.4 NC_005887.1 + 26209 0.66 0.410269
Target:  5'- gGCGGCGgUgGcCGGCcuGCaGCUgGCGCa -3'
miRNA:   3'- gUGCUGCgAgCuGCCG--CG-CGAgCGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.