miRNA display CGI


Results 1 - 20 of 83 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28056 5' -54.3 NC_005887.1 + 15426 0.66 0.678742
Target:  5'- aGugGuUCGuCGAC-GGCggCCAGCGACu -3'
miRNA:   3'- -CugC-GGCuGUUGuCCGaaGGUCGUUG- -5'
28056 5' -54.3 NC_005887.1 + 35064 0.66 0.678742
Target:  5'- cGACGaCCcACAGCGGGCggCCGGgGc- -3'
miRNA:   3'- -CUGC-GGcUGUUGUCCGaaGGUCgUug -5'
28056 5' -54.3 NC_005887.1 + 7326 0.66 0.678742
Target:  5'- -cCGCCGACAACAcGa--CUGGCGACg -3'
miRNA:   3'- cuGCGGCUGUUGUcCgaaGGUCGUUG- -5'
28056 5' -54.3 NC_005887.1 + 40239 0.66 0.678742
Target:  5'- -gUGCCGAgCGAC-GGCUU-CGGCAAUa -3'
miRNA:   3'- cuGCGGCU-GUUGuCCGAAgGUCGUUG- -5'
28056 5' -54.3 NC_005887.1 + 13173 0.66 0.675335
Target:  5'- cGCGCaGACAgcgggagcggucgaGCAGGCcgCCGGcCGACg -3'
miRNA:   3'- cUGCGgCUGU--------------UGUCCGaaGGUC-GUUG- -5'
28056 5' -54.3 NC_005887.1 + 13745 0.66 0.667372
Target:  5'- cGAUGCCGuACGGCuGGCgcgaggacgauUUCCAG-AGCg -3'
miRNA:   3'- -CUGCGGC-UGUUGuCCG-----------AAGGUCgUUG- -5'
28056 5' -54.3 NC_005887.1 + 13256 0.66 0.667372
Target:  5'- cGCGaCCGACGgucacaagGCGGGCguuUUCCGGUAuGCg -3'
miRNA:   3'- cUGC-GGCUGU--------UGUCCG---AAGGUCGU-UG- -5'
28056 5' -54.3 NC_005887.1 + 38540 0.66 0.655966
Target:  5'- gGGCGCUuACAccaGCGGGCgccacuggCCGGUGACa -3'
miRNA:   3'- -CUGCGGcUGU---UGUCCGaa------GGUCGUUG- -5'
28056 5' -54.3 NC_005887.1 + 27238 0.66 0.644536
Target:  5'- uGACGCCGuACuugcGCAGGUUcUCgGGCAu- -3'
miRNA:   3'- -CUGCGGC-UGu---UGUCCGA-AGgUCGUug -5'
28056 5' -54.3 NC_005887.1 + 19502 0.66 0.644536
Target:  5'- cGAUGCCGGCgAGCAucGGCgca-GGCGACc -3'
miRNA:   3'- -CUGCGGCUG-UUGU--CCGaaggUCGUUG- -5'
28056 5' -54.3 NC_005887.1 + 34654 0.66 0.644536
Target:  5'- cGCGCCGGCuuGCcGGUUUCCGGa--- -3'
miRNA:   3'- cUGCGGCUGu-UGuCCGAAGGUCguug -5'
28056 5' -54.3 NC_005887.1 + 12360 0.66 0.644536
Target:  5'- aGGCGgUGACGugGCAGGC--CgAGCAGCa -3'
miRNA:   3'- -CUGCgGCUGU--UGUCCGaaGgUCGUUG- -5'
28056 5' -54.3 NC_005887.1 + 17429 0.66 0.633093
Target:  5'- cGCGaUCGACAACGGuGCcgaUCCGGCuGCu -3'
miRNA:   3'- cUGC-GGCUGUUGUC-CGa--AGGUCGuUG- -5'
28056 5' -54.3 NC_005887.1 + 1896 0.66 0.633093
Target:  5'- cGACGCCGGCAuuCGGGaucaugUCgAGCGc- -3'
miRNA:   3'- -CUGCGGCUGUu-GUCCga----AGgUCGUug -5'
28056 5' -54.3 NC_005887.1 + 12058 0.66 0.633093
Target:  5'- aGGCGCCGcgcuGCAGCAGGU---CGGCAc- -3'
miRNA:   3'- -CUGCGGC----UGUUGUCCGaagGUCGUug -5'
28056 5' -54.3 NC_005887.1 + 6609 0.66 0.633093
Target:  5'- cGACGCUGGCGGCAccGGa-UCCGaCAACg -3'
miRNA:   3'- -CUGCGGCUGUUGU--CCgaAGGUcGUUG- -5'
28056 5' -54.3 NC_005887.1 + 30218 0.67 0.626227
Target:  5'- uGGCGCgCGACGGCGGccugcucguccuggcGCUUCUGcGCGGCc -3'
miRNA:   3'- -CUGCG-GCUGUUGUC---------------CGAAGGU-CGUUG- -5'
28056 5' -54.3 NC_005887.1 + 27278 0.67 0.62165
Target:  5'- cACGCCGGC----GGCUcccUUCGGCGACa -3'
miRNA:   3'- cUGCGGCUGuuguCCGA---AGGUCGUUG- -5'
28056 5' -54.3 NC_005887.1 + 271 0.67 0.62165
Target:  5'- cGCGCCccacGCGACAGcGCUcgucgaUCCAGuCGGCg -3'
miRNA:   3'- cUGCGGc---UGUUGUC-CGA------AGGUC-GUUG- -5'
28056 5' -54.3 NC_005887.1 + 16474 0.67 0.620506
Target:  5'- cGAcCGCgCGGCAggauccgGCGGGCUggUCGGCGAUg -3'
miRNA:   3'- -CU-GCG-GCUGU-------UGUCCGAa-GGUCGUUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.