miRNA display CGI


Results 1 - 20 of 63 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28057 5' -53.4 NC_005887.1 + 40110 0.66 0.756123
Target:  5'- uGGGaCGaGCcgcagGACGCCUACAGcgUgCGGUg -3'
miRNA:   3'- -CCC-GC-CG-----CUGCGGAUGUUuaA-GUCGu -5'
28057 5' -53.4 NC_005887.1 + 33835 0.66 0.752919
Target:  5'- cGGcGCGGCGAUcgaacgcaugcaggGCgUACGAGccugCGGCAg -3'
miRNA:   3'- -CC-CGCCGCUG--------------CGgAUGUUUaa--GUCGU- -5'
28057 5' -53.4 NC_005887.1 + 27356 0.66 0.745398
Target:  5'- -aGCGGCG-CGCagACGAGcgUCGGCAu -3'
miRNA:   3'- ccCGCCGCuGCGgaUGUUUa-AGUCGU- -5'
28057 5' -53.4 NC_005887.1 + 41941 0.66 0.745398
Target:  5'- cGGGCGGCGcggcGCGUCUucg----CGGCGc -3'
miRNA:   3'- -CCCGCCGC----UGCGGAuguuuaaGUCGU- -5'
28057 5' -53.4 NC_005887.1 + 26678 0.66 0.745398
Target:  5'- cGGCGGUGA-GCUgguCGAGcUCGGCGc -3'
miRNA:   3'- cCCGCCGCUgCGGau-GUUUaAGUCGU- -5'
28057 5' -53.4 NC_005887.1 + 31392 0.66 0.745398
Target:  5'- cGGCGuaGCGGUGCgUGCcguGGUUCAGCGg -3'
miRNA:   3'- cCCGC--CGCUGCGgAUGu--UUAAGUCGU- -5'
28057 5' -53.4 NC_005887.1 + 3474 0.66 0.73455
Target:  5'- cGGGCcuGGCG-CGCUgaugaucgagcACGAcgUCGGCAa -3'
miRNA:   3'- -CCCG--CCGCuGCGGa----------UGUUuaAGUCGU- -5'
28057 5' -53.4 NC_005887.1 + 5911 0.66 0.73455
Target:  5'- cGGUcgccaGGCGAUGC--GCAAGUUCGGUg -3'
miRNA:   3'- cCCG-----CCGCUGCGgaUGUUUAAGUCGu -5'
28057 5' -53.4 NC_005887.1 + 31155 0.66 0.73455
Target:  5'- cGGCGaCGAaGCCUAgAuGUUCAGCc -3'
miRNA:   3'- cCCGCcGCUgCGGAUgUuUAAGUCGu -5'
28057 5' -53.4 NC_005887.1 + 8358 0.66 0.73455
Target:  5'- uGGCGGcCGAaGCCUGCGAA---AGCc -3'
miRNA:   3'- cCCGCC-GCUgCGGAUGUUUaagUCGu -5'
28057 5' -53.4 NC_005887.1 + 27122 0.66 0.733458
Target:  5'- cGGGCcgccguuguagucGGCGAucauCGCCUGCAGGUUgCcGCc -3'
miRNA:   3'- -CCCG-------------CCGCU----GCGGAUGUUUAA-GuCGu -5'
28057 5' -53.4 NC_005887.1 + 30154 0.66 0.723591
Target:  5'- cGGcGCGGCGcuguccuucGCgGUCUGCAuGUUCuGCAg -3'
miRNA:   3'- -CC-CGCCGC---------UG-CGGAUGUuUAAGuCGU- -5'
28057 5' -53.4 NC_005887.1 + 12305 0.66 0.723591
Target:  5'- uGGaGCuGGCGcuCGCCUAUGAGgguggcgUCGGCGc -3'
miRNA:   3'- -CC-CG-CCGCu-GCGGAUGUUUa------AGUCGU- -5'
28057 5' -53.4 NC_005887.1 + 27427 0.66 0.723591
Target:  5'- -cGCGGCGuGCGUCgaucGCGAGUgauugCAGCGg -3'
miRNA:   3'- ccCGCCGC-UGCGGa---UGUUUAa----GUCGU- -5'
28057 5' -53.4 NC_005887.1 + 40495 0.66 0.723591
Target:  5'- aGGCGuggcGCGACGUCgu---GUUCGGCAu -3'
miRNA:   3'- cCCGC----CGCUGCGGauguuUAAGUCGU- -5'
28057 5' -53.4 NC_005887.1 + 41974 0.66 0.723591
Target:  5'- -cGCGGCGcgcuCGCCUAUcag--CAGCAc -3'
miRNA:   3'- ccCGCCGCu---GCGGAUGuuuaaGUCGU- -5'
28057 5' -53.4 NC_005887.1 + 27533 0.66 0.72249
Target:  5'- cGGGCggucaugGGCGGCGCUccaucauggugUGCAGcacgCAGCGg -3'
miRNA:   3'- -CCCG-------CCGCUGCGG-----------AUGUUuaa-GUCGU- -5'
28057 5' -53.4 NC_005887.1 + 37490 0.66 0.72249
Target:  5'- aGGGCGGCGGucaguuccuugauCGCC-GCAGuaUUGGCu -3'
miRNA:   3'- -CCCGCCGCU-------------GCGGaUGUUuaAGUCGu -5'
28057 5' -53.4 NC_005887.1 + 18061 0.66 0.712535
Target:  5'- uGGGCgaucgugaacaaGGCGACGCCcgGCAAGUaUGGgGa -3'
miRNA:   3'- -CCCG------------CCGCUGCGGa-UGUUUAaGUCgU- -5'
28057 5' -53.4 NC_005887.1 + 42029 0.66 0.712535
Target:  5'- cGGCGcGCGAUGCgUACAAgg-CGGaCAu -3'
miRNA:   3'- cCCGC-CGCUGCGgAUGUUuaaGUC-GU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.