miRNA display CGI


Results 1 - 20 of 46 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28058 5' -55.7 NC_005887.1 + 32668 0.66 0.63297
Target:  5'- -cGGUGuCGCGCGUGcgCGcUUCGGCa-- -3'
miRNA:   3'- uaUCGC-GCGCGCACa-GC-AAGCUGcug -5'
28058 5' -55.7 NC_005887.1 + 16937 0.66 0.621763
Target:  5'- -gGGCGCGaUGCGUGagcgcuucaacCGcgCGGCGGCa -3'
miRNA:   3'- uaUCGCGC-GCGCACa----------GCaaGCUGCUG- -5'
28058 5' -55.7 NC_005887.1 + 39915 0.66 0.621763
Target:  5'- -cGGUGCGCGCagaUCGagccgggcgcgUCGACGACg -3'
miRNA:   3'- uaUCGCGCGCGcacAGCa----------AGCUGCUG- -5'
28058 5' -55.7 NC_005887.1 + 29657 0.66 0.621763
Target:  5'- --cGUGCGCGCGUGacccugcaacgCGauaagcuucgUCGGCGGCa -3'
miRNA:   3'- uauCGCGCGCGCACa----------GCa---------AGCUGCUG- -5'
28058 5' -55.7 NC_005887.1 + 36369 0.66 0.599387
Target:  5'- -gAGCGCGUGCuccUGaUCc-UCGACGACg -3'
miRNA:   3'- uaUCGCGCGCGc--AC-AGcaAGCUGCUG- -5'
28058 5' -55.7 NC_005887.1 + 8720 0.66 0.599387
Target:  5'- -cAGCGCGCGCuacgGgaaGUUCGAaGACc -3'
miRNA:   3'- uaUCGCGCGCGca--Cag-CAAGCUgCUG- -5'
28058 5' -55.7 NC_005887.1 + 26805 0.66 0.588238
Target:  5'- --cGCGCGCGCcgaGUCGUcgcccgUGACGAa -3'
miRNA:   3'- uauCGCGCGCGca-CAGCAa-----GCUGCUg -5'
28058 5' -55.7 NC_005887.1 + 40516 0.66 0.588238
Target:  5'- -cGGCGCGUuCGUGUCGccgaagaugccgUaccaggUCGGCGGCa -3'
miRNA:   3'- uaUCGCGCGcGCACAGC------------A------AGCUGCUG- -5'
28058 5' -55.7 NC_005887.1 + 34268 0.66 0.588238
Target:  5'- --uGCGCGCGCGcuuUCGUgaaCGACcaGACg -3'
miRNA:   3'- uauCGCGCGCGCac-AGCAa--GCUG--CUG- -5'
28058 5' -55.7 NC_005887.1 + 13943 0.66 0.588238
Target:  5'- --uGCGCGCGCucggcugcgacGUG-CGcgUGACGACa -3'
miRNA:   3'- uauCGCGCGCG-----------CACaGCaaGCUGCUG- -5'
28058 5' -55.7 NC_005887.1 + 20550 0.66 0.588238
Target:  5'- -cAGCGC-CGCGgacGUCGUguugaugcCGGCGAUg -3'
miRNA:   3'- uaUCGCGcGCGCa--CAGCAa-------GCUGCUG- -5'
28058 5' -55.7 NC_005887.1 + 40150 0.66 0.588238
Target:  5'- --uGCGCGCcgcgcucgccGCGUGUgagcUGcgCGACGGCa -3'
miRNA:   3'- uauCGCGCG----------CGCACA----GCaaGCUGCUG- -5'
28058 5' -55.7 NC_005887.1 + 38633 0.66 0.577126
Target:  5'- --uGCGCGgauCGCG-GUCGgcgcgcggcUCGACGGCg -3'
miRNA:   3'- uauCGCGC---GCGCaCAGCa--------AGCUGCUG- -5'
28058 5' -55.7 NC_005887.1 + 24118 0.66 0.577126
Target:  5'- --cGUGCuGCGCGUGUCGUgCGGugUGAa -3'
miRNA:   3'- uauCGCG-CGCGCACAGCAaGCU--GCUg -5'
28058 5' -55.7 NC_005887.1 + 29935 0.66 0.573802
Target:  5'- --cGCGCGCGCGgUGUCGUugcccugcugguacUgGuuGACg -3'
miRNA:   3'- uauCGCGCGCGC-ACAGCA--------------AgCugCUG- -5'
28058 5' -55.7 NC_005887.1 + 41952 0.67 0.566062
Target:  5'- -cGGCGUGCucGCGUGgugCGUgcgCGGCGcGCu -3'
miRNA:   3'- uaUCGCGCG--CGCACa--GCAa--GCUGC-UG- -5'
28058 5' -55.7 NC_005887.1 + 29075 0.67 0.563856
Target:  5'- -cAGCGCcuGCGCcuuuGUGUCGaucggcaacgaaUCGACGGCg -3'
miRNA:   3'- uaUCGCG--CGCG----CACAGCa-----------AGCUGCUG- -5'
28058 5' -55.7 NC_005887.1 + 15316 0.67 0.544109
Target:  5'- -cAGCGUGCGCG-GUCGcgcgcUCGcCGAg -3'
miRNA:   3'- uaUCGCGCGCGCaCAGCa----AGCuGCUg -5'
28058 5' -55.7 NC_005887.1 + 10642 0.67 0.52244
Target:  5'- -gGGCG-GCGuCGuUGggccaaCGUUCGACGACa -3'
miRNA:   3'- uaUCGCgCGC-GC-ACa-----GCAAGCUGCUG- -5'
28058 5' -55.7 NC_005887.1 + 6831 0.68 0.510664
Target:  5'- cGUGGCGCGgGUcugcaacaucgacGUGUCGgaccUCG-CGACg -3'
miRNA:   3'- -UAUCGCGCgCG-------------CACAGCa---AGCuGCUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.