Results 1 - 20 of 37 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
28059 | 5' | -56.3 | NC_005887.1 | + | 19602 | 0.66 | 0.619149 |
Target: 5'- gUUGUAGCCGUCGucCGacuUCGCgagcaguguCCCg -3' miRNA: 3'- aAGCAUCGGCAGCu-GCc--AGCGau-------GGG- -5' |
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28059 | 5' | -56.3 | NC_005887.1 | + | 7416 | 0.66 | 0.608081 |
Target: 5'- gUUCGaAGCCGgCGACGGcaaguucCGCUACa- -3' miRNA: 3'- -AAGCaUCGGCaGCUGCCa------GCGAUGgg -5' |
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28059 | 5' | -56.3 | NC_005887.1 | + | 33656 | 0.66 | 0.608081 |
Target: 5'- -----cGCCG-CGGCGGaUCGCcggGCCCu -3' miRNA: 3'- aagcauCGGCaGCUGCC-AGCGa--UGGG- -5' |
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28059 | 5' | -56.3 | NC_005887.1 | + | 25556 | 0.66 | 0.608081 |
Target: 5'- gUUCGUAGCUGcuUCcGCGuG-CGCUGCCa -3' miRNA: 3'- -AAGCAUCGGC--AGcUGC-CaGCGAUGGg -5' |
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28059 | 5' | -56.3 | NC_005887.1 | + | 40749 | 0.66 | 0.606975 |
Target: 5'- --gGUAGUgCGUUGGCGGUucgaggcCGCcACCCa -3' miRNA: 3'- aagCAUCG-GCAGCUGCCA-------GCGaUGGG- -5' |
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28059 | 5' | -56.3 | NC_005887.1 | + | 12555 | 0.66 | 0.575039 |
Target: 5'- -aCGUGG-CGUCGACGGcCGCcgGCa- -3' miRNA: 3'- aaGCAUCgGCAGCUGCCaGCGa-UGgg -5' |
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28059 | 5' | -56.3 | NC_005887.1 | + | 14373 | 0.66 | 0.564109 |
Target: 5'- aUUCGgcccgAGCCGgCGGCGGcaagagCGaUACCCa -3' miRNA: 3'- -AAGCa----UCGGCaGCUGCCa-----GCgAUGGG- -5' |
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28059 | 5' | -56.3 | NC_005887.1 | + | 13981 | 0.66 | 0.564109 |
Target: 5'- -gCGaAGCCGUCGACGcGuUCG-UGCUCg -3' miRNA: 3'- aaGCaUCGGCAGCUGC-C-AGCgAUGGG- -5' |
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28059 | 5' | -56.3 | NC_005887.1 | + | 29496 | 0.66 | 0.564109 |
Target: 5'- gUCGUAGCCGgcggccUCGACGGcgggCGCgUugUa -3' miRNA: 3'- aAGCAUCGGC------AGCUGCCa---GCG-AugGg -5' |
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28059 | 5' | -56.3 | NC_005887.1 | + | 34748 | 0.67 | 0.553234 |
Target: 5'- cUUCGaAGCCGUCGAaguccuucaGGUCGCcguUCUg -3' miRNA: 3'- -AAGCaUCGGCAGCUg--------CCAGCGau-GGG- -5' |
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28059 | 5' | -56.3 | NC_005887.1 | + | 14642 | 0.67 | 0.542423 |
Target: 5'- -aCGgcAGCCGgCG-CGGU-GCUGCCCg -3' miRNA: 3'- aaGCa-UCGGCaGCuGCCAgCGAUGGG- -5' |
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28059 | 5' | -56.3 | NC_005887.1 | + | 27819 | 0.67 | 0.542423 |
Target: 5'- aUCGacgcGCCGcCGACGGcCGC-GCCUg -3' miRNA: 3'- aAGCau--CGGCaGCUGCCaGCGaUGGG- -5' |
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28059 | 5' | -56.3 | NC_005887.1 | + | 32254 | 0.67 | 0.531683 |
Target: 5'- ---cUGGCCGUCGGCGcGg-GCcGCCCa -3' miRNA: 3'- aagcAUCGGCAGCUGC-CagCGaUGGG- -5' |
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28059 | 5' | -56.3 | NC_005887.1 | + | 41271 | 0.67 | 0.521021 |
Target: 5'- -aUGgcGCCGUCGAccugcgcaCGGgcgCGCUGCUg -3' miRNA: 3'- aaGCauCGGCAGCU--------GCCa--GCGAUGGg -5' |
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28059 | 5' | -56.3 | NC_005887.1 | + | 28714 | 0.67 | 0.510443 |
Target: 5'- gUCGUAGUCGUCGAaCGacacgcgcgCGCUAUCg -3' miRNA: 3'- aAGCAUCGGCAGCU-GCca-------GCGAUGGg -5' |
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28059 | 5' | -56.3 | NC_005887.1 | + | 7604 | 0.68 | 0.499955 |
Target: 5'- -gCGgcGCCGguugaUCGAUGGgcggcgacUGCUGCCCg -3' miRNA: 3'- aaGCauCGGC-----AGCUGCCa-------GCGAUGGG- -5' |
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28059 | 5' | -56.3 | NC_005887.1 | + | 2460 | 0.68 | 0.479275 |
Target: 5'- -aCGgcGCCGUCGACGaGgCGCUgACgCg -3' miRNA: 3'- aaGCauCGGCAGCUGC-CaGCGA-UGgG- -5' |
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28059 | 5' | -56.3 | NC_005887.1 | + | 35723 | 0.68 | 0.44907 |
Target: 5'- -gCGUgcAGCUcgGUCG-CGGUCGUgGCCCa -3' miRNA: 3'- aaGCA--UCGG--CAGCuGCCAGCGaUGGG- -5' |
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28059 | 5' | -56.3 | NC_005887.1 | + | 38234 | 0.69 | 0.439237 |
Target: 5'- -gCGUGGCCGg-GAUGGUCGagcGCUCg -3' miRNA: 3'- aaGCAUCGGCagCUGCCAGCga-UGGG- -5' |
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28059 | 5' | -56.3 | NC_005887.1 | + | 32121 | 0.69 | 0.410494 |
Target: 5'- gUCGauccAGUCGUCGACaG-CGCUGCUCg -3' miRNA: 3'- aAGCa---UCGGCAGCUGcCaGCGAUGGG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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