miRNA display CGI


Results 1 - 20 of 97 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28063 5' -57.7 NC_005887.1 + 10482 0.66 0.547659
Target:  5'- -gCGCGaucaCGCUCGACugguCCGcaUCGAUCg -3'
miRNA:   3'- aaGCGCc---GCGAGCUGu---GGC--AGCUAGg -5'
28063 5' -57.7 NC_005887.1 + 1445 0.66 0.547659
Target:  5'- -gCGCGGUagcccuucggcgGCUCGucguCACCGUCGcguuUCUu -3'
miRNA:   3'- aaGCGCCG------------CGAGCu---GUGGCAGCu---AGG- -5'
28063 5' -57.7 NC_005887.1 + 1588 0.66 0.547659
Target:  5'- cUCgGCGGCGCgCGGCGCgccaaCGgCGAUCg -3'
miRNA:   3'- aAG-CGCCGCGaGCUGUG-----GCaGCUAGg -5'
28063 5' -57.7 NC_005887.1 + 24880 0.66 0.547659
Target:  5'- --gGCGGCgGC-CGAUGCCGcgcgcUCGGUCUu -3'
miRNA:   3'- aagCGCCG-CGaGCUGUGGC-----AGCUAGG- -5'
28063 5' -57.7 NC_005887.1 + 315 0.66 0.547659
Target:  5'- -cCGCGGUGCgcgCGuACACCGagGAa-- -3'
miRNA:   3'- aaGCGCCGCGa--GC-UGUGGCagCUagg -5'
28063 5' -57.7 NC_005887.1 + 20974 0.66 0.547659
Target:  5'- -gCGCuGGCGCUUGGCGCCacgcUCGcaCCu -3'
miRNA:   3'- aaGCG-CCGCGAGCUGUGGc---AGCuaGG- -5'
28063 5' -57.7 NC_005887.1 + 35721 0.66 0.536988
Target:  5'- -aCGCGuGCaGCUCGGuCGCgGUCGuggCCc -3'
miRNA:   3'- aaGCGC-CG-CGAGCU-GUGgCAGCua-GG- -5'
28063 5' -57.7 NC_005887.1 + 23364 0.66 0.536988
Target:  5'- -cCGCGGCGCUCGcagaugcuuuuGCugC-UCGcgCUg -3'
miRNA:   3'- aaGCGCCGCGAGC-----------UGugGcAGCuaGG- -5'
28063 5' -57.7 NC_005887.1 + 26238 0.66 0.536988
Target:  5'- -gCGCGGCGCagCGcCACCGgaaagCGuUUCa -3'
miRNA:   3'- aaGCGCCGCGa-GCuGUGGCa----GCuAGG- -5'
28063 5' -57.7 NC_005887.1 + 26719 0.66 0.52639
Target:  5'- -cCGCGGgcaGCUCGACauagACCGggcgcaCGAUCg -3'
miRNA:   3'- aaGCGCCg--CGAGCUG----UGGCa-----GCUAGg -5'
28063 5' -57.7 NC_005887.1 + 25074 0.66 0.52639
Target:  5'- -gCGCGGCGCcgccCGACGucucgcCCGgcaCGAUCUu -3'
miRNA:   3'- aaGCGCCGCGa---GCUGU------GGCa--GCUAGG- -5'
28063 5' -57.7 NC_005887.1 + 31907 0.66 0.52639
Target:  5'- -aCGCgaugGGUGCaCuGCGCCGUCGGUCa -3'
miRNA:   3'- aaGCG----CCGCGaGcUGUGGCAGCUAGg -5'
28063 5' -57.7 NC_005887.1 + 6040 0.66 0.52639
Target:  5'- -gCGCGGCG-UCGAcCGCCGcgcaGAUCg -3'
miRNA:   3'- aaGCGCCGCgAGCU-GUGGCag--CUAGg -5'
28063 5' -57.7 NC_005887.1 + 8861 0.66 0.520069
Target:  5'- -aCGcCGGCGCgcccgucgagaucgCGACGCCGUaCGcgCUc -3'
miRNA:   3'- aaGC-GCCGCGa-------------GCUGUGGCA-GCuaGG- -5'
28063 5' -57.7 NC_005887.1 + 27743 0.66 0.515872
Target:  5'- cUCGaCGGCGC-CGACgGCCGUaCGcGUaCCg -3'
miRNA:   3'- aAGC-GCCGCGaGCUG-UGGCA-GC-UA-GG- -5'
28063 5' -57.7 NC_005887.1 + 23956 0.66 0.515872
Target:  5'- -cCGCGGCGUaggccaucggguUCGcgaGCGCCGgCGcgCCg -3'
miRNA:   3'- aaGCGCCGCG------------AGC---UGUGGCaGCuaGG- -5'
28063 5' -57.7 NC_005887.1 + 8613 0.66 0.515872
Target:  5'- cUCGCcGuUGCUCGguGCACgUGUCGAUCUg -3'
miRNA:   3'- aAGCGcC-GCGAGC--UGUG-GCAGCUAGG- -5'
28063 5' -57.7 NC_005887.1 + 40758 0.66 0.515872
Target:  5'- aUCGCcguuGGCGCgccgCG-CGCCGcCGAgCCg -3'
miRNA:   3'- aAGCG----CCGCGa---GCuGUGGCaGCUaGG- -5'
28063 5' -57.7 NC_005887.1 + 16963 0.66 0.512732
Target:  5'- -gCGCGGCggcaaugucggcgaGCUCGACuacggcuaCGUgcCGAUCCg -3'
miRNA:   3'- aaGCGCCG--------------CGAGCUGug------GCA--GCUAGG- -5'
28063 5' -57.7 NC_005887.1 + 14702 0.66 0.505439
Target:  5'- gUCGCGGCGggCGG-GCCGggcgcggCGAUCg -3'
miRNA:   3'- aAGCGCCGCgaGCUgUGGCa------GCUAGg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.