miRNA display CGI


Results 1 - 20 of 53 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28066 3' -51.8 NC_005887.1 + 24980 0.66 0.853038
Target:  5'- cGAGGga--CAGGuCGGgGuaguUGCCGAGCg -3'
miRNA:   3'- -CUUCaaaaGUCU-GCCgCu---GCGGCUCG- -5'
28066 3' -51.8 NC_005887.1 + 10634 0.66 0.853038
Target:  5'- cGGAGcc--UGGGCGGCGuCGuuGGGCc -3'
miRNA:   3'- -CUUCaaaaGUCUGCCGCuGCggCUCG- -5'
28066 3' -51.8 NC_005887.1 + 36300 0.66 0.853038
Target:  5'- -cGGUUggccgaucugCGcGGCGGuCGACGCCGcGCa -3'
miRNA:   3'- cuUCAAaa--------GU-CUGCC-GCUGCGGCuCG- -5'
28066 3' -51.8 NC_005887.1 + 28279 0.66 0.853038
Target:  5'- ------aUCAu-CGGC-ACGCCGAGCg -3'
miRNA:   3'- cuucaaaAGUcuGCCGcUGCGGCUCG- -5'
28066 3' -51.8 NC_005887.1 + 29849 0.66 0.85216
Target:  5'- uGAGGaugucgCAGGCGaugaacacguccuGCGGCagGCCGAGCg -3'
miRNA:   3'- -CUUCaaaa--GUCUGC-------------CGCUG--CGGCUCG- -5'
28066 3' -51.8 NC_005887.1 + 23468 0.66 0.844141
Target:  5'- gGAAGcccggCAGcCGGCGACGCCc--- -3'
miRNA:   3'- -CUUCaaaa-GUCuGCCGCUGCGGcucg -5'
28066 3' -51.8 NC_005887.1 + 15657 0.66 0.844141
Target:  5'- --cGUgucgCAGAU-GCG-CGCCGAGCu -3'
miRNA:   3'- cuuCAaaa-GUCUGcCGCuGCGGCUCG- -5'
28066 3' -51.8 NC_005887.1 + 6469 0.66 0.844141
Target:  5'- uGAAGUacgggcgCGGcgucGCGGUGucUGCCGAGCg -3'
miRNA:   3'- -CUUCAaaa----GUC----UGCCGCu-GCGGCUCG- -5'
28066 3' -51.8 NC_005887.1 + 29729 0.66 0.844141
Target:  5'- -cAGUggcuggUCGGGCuucuGCGucagcACGCCGAGCg -3'
miRNA:   3'- cuUCAaa----AGUCUGc---CGC-----UGCGGCUCG- -5'
28066 3' -51.8 NC_005887.1 + 33051 0.66 0.835003
Target:  5'- -cGGcgUUUCGGugcccguaaccuGCGGCGuCGCCGuGCc -3'
miRNA:   3'- cuUCa-AAAGUC------------UGCCGCuGCGGCuCG- -5'
28066 3' -51.8 NC_005887.1 + 37201 0.66 0.825633
Target:  5'- ------aUCAG-CGGCgcgccGACGUCGGGCa -3'
miRNA:   3'- cuucaaaAGUCuGCCG-----CUGCGGCUCG- -5'
28066 3' -51.8 NC_005887.1 + 19199 0.66 0.816044
Target:  5'- uGGAGa---CAGGCGGCGcgguuACGaCGAGCg -3'
miRNA:   3'- -CUUCaaaaGUCUGCCGC-----UGCgGCUCG- -5'
28066 3' -51.8 NC_005887.1 + 16384 0.66 0.816044
Target:  5'- cGAAGUgucgaAGAugcuCGGCGucUGCCGGGCc -3'
miRNA:   3'- -CUUCAaaag-UCU----GCCGCu-GCGGCUCG- -5'
28066 3' -51.8 NC_005887.1 + 14151 0.66 0.816044
Target:  5'- --------gAGACGcGCGGCGCUGAuGCg -3'
miRNA:   3'- cuucaaaagUCUGC-CGCUGCGGCU-CG- -5'
28066 3' -51.8 NC_005887.1 + 11388 0.66 0.814101
Target:  5'- cGAAGUUccucacguacgCGGGCGcCGAcaucacCGCCGAGCg -3'
miRNA:   3'- -CUUCAAaa---------GUCUGCcGCU------GCGGCUCG- -5'
28066 3' -51.8 NC_005887.1 + 20162 0.66 0.806245
Target:  5'- ------gUCAaGCGGCGGCGCCGuuGUu -3'
miRNA:   3'- cuucaaaAGUcUGCCGCUGCGGCu-CG- -5'
28066 3' -51.8 NC_005887.1 + 11394 0.67 0.796249
Target:  5'- cGGAGcg--CuGGCGGcCGGCGCCGccaaGGCa -3'
miRNA:   3'- -CUUCaaaaGuCUGCC-GCUGCGGC----UCG- -5'
28066 3' -51.8 NC_005887.1 + 25035 0.67 0.786067
Target:  5'- gGAAGUg--CAGcacGCGGUG-CGCCGAaccgGCg -3'
miRNA:   3'- -CUUCAaaaGUC---UGCCGCuGCGGCU----CG- -5'
28066 3' -51.8 NC_005887.1 + 24609 0.67 0.786067
Target:  5'- ------aUCAGcCGcGCGGCcguGCCGAGCg -3'
miRNA:   3'- cuucaaaAGUCuGC-CGCUG---CGGCUCG- -5'
28066 3' -51.8 NC_005887.1 + 27961 0.67 0.775712
Target:  5'- -cAGg--UCGuACGcGCGcGCGCCGAGCg -3'
miRNA:   3'- cuUCaaaAGUcUGC-CGC-UGCGGCUCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.