miRNA display CGI


Results 1 - 20 of 132 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28069 3' -60.6 NC_005887.1 + 12075 0.66 0.407458
Target:  5'- cGUGCGCGGcacgaucgucGCGCCGgACggCAagCGCCu -3'
miRNA:   3'- -CAUGCGCC----------CGCGGC-UGuaGUg-GCGGc -5'
28069 3' -60.6 NC_005887.1 + 37768 0.66 0.355329
Target:  5'- cUGCGCGGccuGCGCCucGGCGgcuugCugCGCCu -3'
miRNA:   3'- cAUGCGCC---CGCGG--CUGUa----GugGCGGc -5'
28069 3' -60.6 NC_005887.1 + 1596 0.66 0.355329
Target:  5'- -cGCGCGGcGCGCCaACGgcgAUCGCCu -3'
miRNA:   3'- caUGCGCC-CGCGGcUGUag-UGGCGGc -5'
28069 3' -60.6 NC_005887.1 + 11400 1.09 0.000251
Target:  5'- cGUACGCGGGCGCCGACAUCACCGCCGa -3'
miRNA:   3'- -CAUGCGCCCGCGGCUGUAGUGGCGGC- -5'
28069 3' -60.6 NC_005887.1 + 624 0.66 0.406551
Target:  5'- -cGCGcCGGGaucggauCGCCGccCGUCAUCGCCu -3'
miRNA:   3'- caUGC-GCCC-------GCGGCu-GUAGUGGCGGc -5'
28069 3' -60.6 NC_005887.1 + 27061 0.66 0.398442
Target:  5'- gGUAUGCGGcagucucguuCGCCGGCGgacgcUCGCCGCg- -3'
miRNA:   3'- -CAUGCGCCc---------GCGGCUGU-----AGUGGCGgc -5'
28069 3' -60.6 NC_005887.1 + 17742 0.66 0.398442
Target:  5'- -cACGCGuGCgGCCGcaAgAUCAUCGCCGc -3'
miRNA:   3'- caUGCGCcCG-CGGC--UgUAGUGGCGGC- -5'
28069 3' -60.6 NC_005887.1 + 21472 0.66 0.398442
Target:  5'- -cACGCcGGCGCCacuauCAUUcagGCCGCCa -3'
miRNA:   3'- caUGCGcCCGCGGcu---GUAG---UGGCGGc -5'
28069 3' -60.6 NC_005887.1 + 7990 0.66 0.389554
Target:  5'- aUACGCgGGGCGCU--CGUCuCCaGCCGu -3'
miRNA:   3'- cAUGCG-CCCGCGGcuGUAGuGG-CGGC- -5'
28069 3' -60.6 NC_005887.1 + 29018 0.66 0.362842
Target:  5'- cUGCGCGGcgagauccgcgauGCgGCCGGCGUUGCCgaacgccugGCCGa -3'
miRNA:   3'- cAUGCGCC-------------CG-CGGCUGUAGUGG---------CGGC- -5'
28069 3' -60.6 NC_005887.1 + 27805 0.66 0.380798
Target:  5'- -cGCGCGacaUGCCGAUcgacgCGCCGCCGa -3'
miRNA:   3'- caUGCGCcc-GCGGCUGua---GUGGCGGC- -5'
28069 3' -60.6 NC_005887.1 + 27735 0.66 0.389554
Target:  5'- -aGCGCGcccucgacGGCGCCGACG--GCCGUa- -3'
miRNA:   3'- caUGCGC--------CCGCGGCUGUagUGGCGgc -5'
28069 3' -60.6 NC_005887.1 + 9060 0.66 0.407458
Target:  5'- cGUACGCGGauggaaguGCGCCGGCu--GCgGCgGg -3'
miRNA:   3'- -CAUGCGCC--------CGCGGCUGuagUGgCGgC- -5'
28069 3' -60.6 NC_005887.1 + 26797 0.66 0.380798
Target:  5'- -aGCGCGGucgcgcGCGCCGA-GUCGUCGCCc -3'
miRNA:   3'- caUGCGCC------CGCGGCUgUAGUGGCGGc -5'
28069 3' -60.6 NC_005887.1 + 25846 0.66 0.407458
Target:  5'- -gACGCGaucGGCcugCGACAUCGCCGaCCa -3'
miRNA:   3'- caUGCGC---CCGcg-GCUGUAGUGGC-GGc -5'
28069 3' -60.6 NC_005887.1 + 6388 0.66 0.395762
Target:  5'- -aACGCGGggcgaagggcacgaGCGacugCGugAUCAUCGCCGu -3'
miRNA:   3'- caUGCGCC--------------CGCg---GCugUAGUGGCGGC- -5'
28069 3' -60.6 NC_005887.1 + 2212 0.66 0.363684
Target:  5'- -aGCGCGGcGCGCa-GCGcgCACCGCaCGc -3'
miRNA:   3'- caUGCGCC-CGCGgcUGUa-GUGGCG-GC- -5'
28069 3' -60.6 NC_005887.1 + 23406 0.66 0.355329
Target:  5'- cGUGCGUuauuGGcCGCCGACG--GCCGCUGc -3'
miRNA:   3'- -CAUGCGc---CC-GCGGCUGUagUGGCGGC- -5'
28069 3' -60.6 NC_005887.1 + 26220 0.66 0.406551
Target:  5'- gGUugGCGGggugguuGCGCgCGGCG-CAgCGCCa -3'
miRNA:   3'- -CAugCGCC-------CGCG-GCUGUaGUgGCGGc -5'
28069 3' -60.6 NC_005887.1 + 24598 0.66 0.398442
Target:  5'- -aAC-CGGGCGCCaucaGCcgCGCgGCCGu -3'
miRNA:   3'- caUGcGCCCGCGGc---UGuaGUGgCGGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.