miRNA display CGI


Results 1 - 20 of 112 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28073 3' -63.8 NC_005887.1 + 25494 0.66 0.293953
Target:  5'- aGCGgCGGCucggacgaUGGCgCGGCGGguggcggcauaaucgUCGCCg -3'
miRNA:   3'- gCGCgGCCG--------ACCGgGCUGCU---------------AGCGGg -5'
28073 3' -63.8 NC_005887.1 + 6771 0.66 0.29116
Target:  5'- uGCaagGCCaaGGCcgUGuGCCCGGCGcUCGCCg -3'
miRNA:   3'- gCG---CGG--CCG--AC-CGGGCUGCuAGCGGg -5'
28073 3' -63.8 NC_005887.1 + 23530 0.66 0.29116
Target:  5'- aCGCGCgGGUgagcUGGCagcguacgCUGACGc-CGCCCg -3'
miRNA:   3'- -GCGCGgCCG----ACCG--------GGCUGCuaGCGGG- -5'
28073 3' -63.8 NC_005887.1 + 8861 0.66 0.29116
Target:  5'- -aCGCCGGC-GcGCCCGucgaGAUCGCg- -3'
miRNA:   3'- gcGCGGCCGaC-CGGGCug--CUAGCGgg -5'
28073 3' -63.8 NC_005887.1 + 32079 0.66 0.287009
Target:  5'- aGCGCaCGGUcuGCCCGuugaccuggcggcggACGAUCaCCCa -3'
miRNA:   3'- gCGCG-GCCGacCGGGC---------------UGCUAGcGGG- -5'
28073 3' -63.8 NC_005887.1 + 10475 0.66 0.287009
Target:  5'- aCG-GCCGGCgcgaucacgcucgacUGGUCCGcauCGAUCGUgCa -3'
miRNA:   3'- -GCgCGGCCG---------------ACCGGGCu--GCUAGCGgG- -5'
28073 3' -63.8 NC_005887.1 + 15496 0.66 0.284268
Target:  5'- gGUGcCCGGCggcaacGGCuaCCGGCaGAcgCGCCCg -3'
miRNA:   3'- gCGC-GGCCGa-----CCG--GGCUG-CUa-GCGGG- -5'
28073 3' -63.8 NC_005887.1 + 13385 0.66 0.277505
Target:  5'- uCGCGCUgaaGGCcGGCgCGGCGGaCGUCg -3'
miRNA:   3'- -GCGCGG---CCGaCCGgGCUGCUaGCGGg -5'
28073 3' -63.8 NC_005887.1 + 31702 0.66 0.277505
Target:  5'- uGuCGUCGaacGUUGGCCCaACGAcgcCGCCCa -3'
miRNA:   3'- gC-GCGGC---CGACCGGGcUGCUa--GCGGG- -5'
28073 3' -63.8 NC_005887.1 + 34939 0.66 0.277505
Target:  5'- gGCGgCGGCgGGUgcgaCCGugGCGAUCGUCg -3'
miRNA:   3'- gCGCgGCCGaCCG----GGC--UGCUAGCGGg -5'
28073 3' -63.8 NC_005887.1 + 15104 0.66 0.27351
Target:  5'- gCGgGCCGGCgcgcgaugcaguuGCgCCG-CGAUgCGCCCg -3'
miRNA:   3'- -GCgCGGCCGac-----------CG-GGCuGCUA-GCGGG- -5'
28073 3' -63.8 NC_005887.1 + 23259 0.66 0.270872
Target:  5'- gCGCGCaaaaGGCgcaGCUCGugGCGGUUGCCg -3'
miRNA:   3'- -GCGCGg---CCGac-CGGGC--UGCUAGCGGg -5'
28073 3' -63.8 NC_005887.1 + 27494 0.66 0.270872
Target:  5'- gCGCGCUGuuGCUGcggugugcacGCCCG-CGAacgUGCCCg -3'
miRNA:   3'- -GCGCGGC--CGAC----------CGGGCuGCUa--GCGGG- -5'
28073 3' -63.8 NC_005887.1 + 19072 0.66 0.270872
Target:  5'- gGCGCgGGCUgcGGCaaCCGccACGAgcugCGCCUu -3'
miRNA:   3'- gCGCGgCCGA--CCG--GGC--UGCUa---GCGGG- -5'
28073 3' -63.8 NC_005887.1 + 36436 0.66 0.270872
Target:  5'- gCGCgGCCGGCUucuuGCCCuuCGGccaGCCCg -3'
miRNA:   3'- -GCG-CGGCCGAc---CGGGcuGCUag-CGGG- -5'
28073 3' -63.8 NC_005887.1 + 14034 0.66 0.264366
Target:  5'- gCGcCGCCGGCgcaGCCUgaGACGAU-GCCg -3'
miRNA:   3'- -GC-GCGGCCGac-CGGG--CUGCUAgCGGg -5'
28073 3' -63.8 NC_005887.1 + 29497 0.66 0.264366
Target:  5'- uCGUaGCCGGC-GGCCuCGACGGcgggCGCg- -3'
miRNA:   3'- -GCG-CGGCCGaCCGG-GCUGCUa---GCGgg -5'
28073 3' -63.8 NC_005887.1 + 15620 0.66 0.264366
Target:  5'- uCGCGCagcaGGCggccgGGCUCGcCGAUCaggGCgCCg -3'
miRNA:   3'- -GCGCGg---CCGa----CCGGGCuGCUAG---CG-GG- -5'
28073 3' -63.8 NC_005887.1 + 14986 0.66 0.257988
Target:  5'- gCGCagGCCGcGCaGGCCgcaGGCGugcCGCCCg -3'
miRNA:   3'- -GCG--CGGC-CGaCCGGg--CUGCua-GCGGG- -5'
28073 3' -63.8 NC_005887.1 + 9271 0.66 0.257988
Target:  5'- uGUGCaCGGCggucGGCaCGGCGA-CGCCg -3'
miRNA:   3'- gCGCG-GCCGa---CCGgGCUGCUaGCGGg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.