miRNA display CGI


Results 1 - 20 of 85 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28074 3' -50.3 NC_005887.1 + 14543 0.66 0.910742
Target:  5'- ---gGCGGCGcgucGAUCGGcaugUCGCGCGCg -3'
miRNA:   3'- augaUGUUGCu---CUAGCUa---GGCGUGCG- -5'
28074 3' -50.3 NC_005887.1 + 6382 0.66 0.910742
Target:  5'- aACUGCGGCaugcUCGAagCGUACGCg -3'
miRNA:   3'- aUGAUGUUGcucuAGCUagGCGUGCG- -5'
28074 3' -50.3 NC_005887.1 + 6787 0.66 0.910742
Target:  5'- cACUACAAgUGGGAcaUCGG-CCuCACGCu -3'
miRNA:   3'- aUGAUGUU-GCUCU--AGCUaGGcGUGCG- -5'
28074 3' -50.3 NC_005887.1 + 15924 0.66 0.910742
Target:  5'- gGCUGCAGCGcg--CGuucCCGCGCGg -3'
miRNA:   3'- aUGAUGUUGCucuaGCua-GGCGUGCg -5'
28074 3' -50.3 NC_005887.1 + 35199 0.66 0.903792
Target:  5'- ---aACGGCGGGG-CGAUUCGuUGCGCa -3'
miRNA:   3'- augaUGUUGCUCUaGCUAGGC-GUGCG- -5'
28074 3' -50.3 NC_005887.1 + 8677 0.66 0.903792
Target:  5'- aACUucaucGCGACGgugcAGGgcccggCGAUCCGC-CGCg -3'
miRNA:   3'- aUGA-----UGUUGC----UCUa-----GCUAGGCGuGCG- -5'
28074 3' -50.3 NC_005887.1 + 41338 0.66 0.903792
Target:  5'- gACgccgguUGAGuaCGAUCCGCGCGCc -3'
miRNA:   3'- aUGauguu-GCUCuaGCUAGGCGUGCG- -5'
28074 3' -50.3 NC_005887.1 + 29016 0.66 0.903792
Target:  5'- cACUGCGcgGCGAGA----UCCGCgAUGCg -3'
miRNA:   3'- aUGAUGU--UGCUCUagcuAGGCG-UGCG- -5'
28074 3' -50.3 NC_005887.1 + 24880 0.66 0.896543
Target:  5'- ---gGCGGCGGc--CGAUgCCGCGCGCu -3'
miRNA:   3'- augaUGUUGCUcuaGCUA-GGCGUGCG- -5'
28074 3' -50.3 NC_005887.1 + 13926 0.66 0.896543
Target:  5'- cGCgguguCGACGGGGUCGAagUUCGuCACGg -3'
miRNA:   3'- aUGau---GUUGCUCUAGCU--AGGC-GUGCg -5'
28074 3' -50.3 NC_005887.1 + 9371 0.66 0.896543
Target:  5'- gGCgacaGACGAauacgGGUCGAUCgGCGCGg -3'
miRNA:   3'- aUGaug-UUGCU-----CUAGCUAGgCGUGCg -5'
28074 3' -50.3 NC_005887.1 + 9738 0.66 0.896543
Target:  5'- cGCU-CGACGGGAagcucgugugCGggCUGCACGUg -3'
miRNA:   3'- aUGAuGUUGCUCUa---------GCuaGGCGUGCG- -5'
28074 3' -50.3 NC_005887.1 + 32464 0.66 0.896543
Target:  5'- cACUGCGcgGCGugcGGAUCGAUCUcguuguaguagGCACcGCu -3'
miRNA:   3'- aUGAUGU--UGC---UCUAGCUAGG-----------CGUG-CG- -5'
28074 3' -50.3 NC_005887.1 + 5807 0.66 0.888997
Target:  5'- gACcagACGGCGGcGAUCGAgUCgGCGCGg -3'
miRNA:   3'- aUGa--UGUUGCU-CUAGCU-AGgCGUGCg -5'
28074 3' -50.3 NC_005887.1 + 901 0.66 0.881162
Target:  5'- gGCgGCcuCGGcuUCGAUCCGCGuCGCg -3'
miRNA:   3'- aUGaUGuuGCUcuAGCUAGGCGU-GCG- -5'
28074 3' -50.3 NC_005887.1 + 36480 0.66 0.881162
Target:  5'- -uCUGCAACGAGGUucgCGAUcaccggaaCCGUGCGg -3'
miRNA:   3'- auGAUGUUGCUCUA---GCUA--------GGCGUGCg -5'
28074 3' -50.3 NC_005887.1 + 10164 0.66 0.873042
Target:  5'- -uCUACGGCuGGcAUCGGcaUCCGgACGCg -3'
miRNA:   3'- auGAUGUUGcUC-UAGCU--AGGCgUGCG- -5'
28074 3' -50.3 NC_005887.1 + 38629 0.67 0.864645
Target:  5'- aGCUu--GCGcGGAUCGcgGUCgGCGCGCg -3'
miRNA:   3'- aUGAuguUGC-UCUAGC--UAGgCGUGCG- -5'
28074 3' -50.3 NC_005887.1 + 42108 0.67 0.864645
Target:  5'- cGCgucgACgAACGAGGacuuguggCGAUCCugGCGCGCa -3'
miRNA:   3'- aUGa---UG-UUGCUCUa-------GCUAGG--CGUGCG- -5'
28074 3' -50.3 NC_005887.1 + 12642 0.67 0.855979
Target:  5'- -cCUGCGACGcGAcggCGAguggCUGCGCGUg -3'
miRNA:   3'- auGAUGUUGCuCUa--GCUa---GGCGUGCG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.