miRNA display CGI


Results 1 - 20 of 125 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28074 5' -60.6 NC_005887.1 + 28772 0.66 0.378889
Target:  5'- --aCGCGGCCUccuucgCGUCGUCGGCCu -3'
miRNA:   3'- gacGCGUUGGAcua---GCGGCGGCCGGu -5'
28074 5' -60.6 NC_005887.1 + 21472 0.66 0.378889
Target:  5'- -aGCGggucggguuucuCGACCUaucucGcAUCGCCGCCGGCa- -3'
miRNA:   3'- gaCGC------------GUUGGA-----C-UAGCGGCGGCCGgu -5'
28074 5' -60.6 NC_005887.1 + 4271 0.66 0.378889
Target:  5'- aCUGCuCGGCCcgaUGAUCGCgCGCgaGGUCGa -3'
miRNA:   3'- -GACGcGUUGG---ACUAGCG-GCGg-CCGGU- -5'
28074 5' -60.6 NC_005887.1 + 4146 0.66 0.378889
Target:  5'- gCUGCGCGcgaCUGGcUCGgguauugaGCCGGCCAu -3'
miRNA:   3'- -GACGCGUug-GACU-AGCgg------CGGCCGGU- -5'
28074 5' -60.6 NC_005887.1 + 40869 0.66 0.370194
Target:  5'- -cGCGCGagcGCCgca-CGCCGUCGGCg- -3'
miRNA:   3'- gaCGCGU---UGGacuaGCGGCGGCCGgu -5'
28074 5' -60.6 NC_005887.1 + 19141 0.66 0.370194
Target:  5'- -gGCGUGGCCcuUGAaguaGCCGCCcccGGCCGu -3'
miRNA:   3'- gaCGCGUUGG--ACUag--CGGCGG---CCGGU- -5'
28074 5' -60.6 NC_005887.1 + 23935 0.66 0.370194
Target:  5'- -aGCGuCGugCUGAcgacggCGCCGCggcguaGGCCAu -3'
miRNA:   3'- gaCGC-GUugGACUa-----GCGGCGg-----CCGGU- -5'
28074 5' -60.6 NC_005887.1 + 31223 0.66 0.370194
Target:  5'- aUGCGCcGCCacggCGCC-UCGGCCAg -3'
miRNA:   3'- gACGCGuUGGacuaGCGGcGGCCGGU- -5'
28074 5' -60.6 NC_005887.1 + 13826 0.66 0.358252
Target:  5'- -cGCGCGugagcguGCCUGAccgcaucgucaucuUC-CCGCCGGCg- -3'
miRNA:   3'- gaCGCGU-------UGGACU--------------AGcGGCGGCCGgu -5'
28074 5' -60.6 NC_005887.1 + 35424 0.66 0.354053
Target:  5'- -gGCGCGGCCcaugccgaguugcggGAuUCGCuCGgCGGCCAu -3'
miRNA:   3'- gaCGCGUUGGa--------------CU-AGCG-GCgGCCGGU- -5'
28074 5' -60.6 NC_005887.1 + 22269 0.66 0.353218
Target:  5'- -cGCGCAGCaggcGAUCGgauuucUCGUCGGCCu -3'
miRNA:   3'- gaCGCGUUGga--CUAGC------GGCGGCCGGu -5'
28074 5' -60.6 NC_005887.1 + 40953 0.66 0.353218
Target:  5'- -aGCGCAugCUcGAccgcuUCGgCGCgGGCCu -3'
miRNA:   3'- gaCGCGUugGA-CU-----AGCgGCGgCCGGu -5'
28074 5' -60.6 NC_005887.1 + 35724 0.66 0.353218
Target:  5'- -cGUGCAGCUcGGUCGCgGUCguGGCCc -3'
miRNA:   3'- gaCGCGUUGGaCUAGCGgCGG--CCGGu -5'
28074 5' -60.6 NC_005887.1 + 19108 0.66 0.352383
Target:  5'- uUGCGC-GCC-GAcCGCCGCCGcucgcguGCCGu -3'
miRNA:   3'- gACGCGuUGGaCUaGCGGCGGC-------CGGU- -5'
28074 5' -60.6 NC_005887.1 + 26177 0.66 0.350719
Target:  5'- -cGCGCAgguucGCCUcGAUCGCucgcgcacucggcgCGCCGGUg- -3'
miRNA:   3'- gaCGCGU-----UGGA-CUAGCG--------------GCGGCCGgu -5'
28074 5' -60.6 NC_005887.1 + 7398 0.66 0.344938
Target:  5'- cCUGCGCAcgcccGCCgaguUCGaaGCCGGCg- -3'
miRNA:   3'- -GACGCGU-----UGGacu-AGCggCGGCCGgu -5'
28074 5' -60.6 NC_005887.1 + 1714 0.66 0.344938
Target:  5'- -cGCGCGcucgucaguGCCUGucUUGCCGaugugCGGCCAc -3'
miRNA:   3'- gaCGCGU---------UGGACu-AGCGGCg----GCCGGU- -5'
28074 5' -60.6 NC_005887.1 + 14368 0.66 0.336799
Target:  5'- -cGgGC-ACCUGuucgaGUCGCCGCuCGGCg- -3'
miRNA:   3'- gaCgCGuUGGAC-----UAGCGGCG-GCCGgu -5'
28074 5' -60.6 NC_005887.1 + 26401 0.66 0.336799
Target:  5'- uCUGCGgGuUCUGGUCgaGCUGgCGGCCGc -3'
miRNA:   3'- -GACGCgUuGGACUAG--CGGCgGCCGGU- -5'
28074 5' -60.6 NC_005887.1 + 5435 0.66 0.336799
Target:  5'- -gGCGCGACCa---CGCCGCCcGCUg -3'
miRNA:   3'- gaCGCGUUGGacuaGCGGCGGcCGGu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.