miRNA display CGI


Results 1 - 20 of 54 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28077 5' -54.4 NC_005887.1 + 4062 0.65 0.715141
Target:  5'- -gGCaCCCugaccguUGCGUGCGaagUCG-UCGCCa -3'
miRNA:   3'- caUGcGGG-------ACGUACGCa--AGCuAGCGG- -5'
28077 5' -54.4 NC_005887.1 + 7214 0.66 0.705235
Target:  5'- cGUGCGCaggcgCUGUcgGCG-UCGggCGCa -3'
miRNA:   3'- -CAUGCGg----GACGuaCGCaAGCuaGCGg -5'
28077 5' -54.4 NC_005887.1 + 28790 0.66 0.705235
Target:  5'- cGU-CGgCCUGCucggGCGgcagCGcAUCGCCg -3'
miRNA:   3'- -CAuGCgGGACGua--CGCaa--GC-UAGCGG- -5'
28077 5' -54.4 NC_005887.1 + 17211 0.66 0.694158
Target:  5'- uUGCGCCgCgcaagcaggGCGUGUGggacaCGAUCGCg -3'
miRNA:   3'- cAUGCGG-Ga--------CGUACGCaa---GCUAGCGg -5'
28077 5' -54.4 NC_005887.1 + 39267 0.66 0.683018
Target:  5'- aUGCGgCCgugGUcgGCGUUCag-CGCCu -3'
miRNA:   3'- cAUGCgGGa--CGuaCGCAAGcuaGCGG- -5'
28077 5' -54.4 NC_005887.1 + 15201 0.66 0.660597
Target:  5'- -cGCGCCCgugGCcguucggccGCGU--GAUCGCCg -3'
miRNA:   3'- caUGCGGGa--CGua-------CGCAagCUAGCGG- -5'
28077 5' -54.4 NC_005887.1 + 36568 0.66 0.660597
Target:  5'- cGUGCGCCUgcuucgcaguagUGCAUGCaua-GAUgaCGCCg -3'
miRNA:   3'- -CAUGCGGG------------ACGUACGcaagCUA--GCGG- -5'
28077 5' -54.4 NC_005887.1 + 29091 0.66 0.660597
Target:  5'- -aACGCCC-GCcuUGUGaccgUCGGUCGCg -3'
miRNA:   3'- caUGCGGGaCGu-ACGCa---AGCUAGCGg -5'
28077 5' -54.4 NC_005887.1 + 25823 0.66 0.660597
Target:  5'- -cGCGCCCacucggcGCcgGCGgcgacgCGAUCgGCCu -3'
miRNA:   3'- caUGCGGGa------CGuaCGCaa----GCUAG-CGG- -5'
28077 5' -54.4 NC_005887.1 + 16299 0.66 0.659472
Target:  5'- -cACGCCUUgaacacgcaggacGCcgGCcuGUUCGAggUCGCCg -3'
miRNA:   3'- caUGCGGGA-------------CGuaCG--CAAGCU--AGCGG- -5'
28077 5' -54.4 NC_005887.1 + 5352 0.67 0.649339
Target:  5'- cGUACGgCCUGC--GCGUgc--UCGCCg -3'
miRNA:   3'- -CAUGCgGGACGuaCGCAagcuAGCGG- -5'
28077 5' -54.4 NC_005887.1 + 15010 0.67 0.649339
Target:  5'- -cGCGCCgCUGCGcgugGCGcagUCGAcgUgGCCg -3'
miRNA:   3'- caUGCGG-GACGUa---CGCa--AGCU--AgCGG- -5'
28077 5' -54.4 NC_005887.1 + 35832 0.67 0.649339
Target:  5'- cGUGCGCCgC-GUcgGCGUagaUC-AUCGCCu -3'
miRNA:   3'- -CAUGCGG-GaCGuaCGCA---AGcUAGCGG- -5'
28077 5' -54.4 NC_005887.1 + 3249 0.67 0.649339
Target:  5'- -cGCGCCgCUcGCGcUGCGcaacUUCG-UCGCCg -3'
miRNA:   3'- caUGCGG-GA-CGU-ACGC----AAGCuAGCGG- -5'
28077 5' -54.4 NC_005887.1 + 37472 0.67 0.647085
Target:  5'- aGUGCGCCggaUGCGaucaggGCGgcggucaguuccUUGAUCGCCg -3'
miRNA:   3'- -CAUGCGGg--ACGUa-----CGCa-----------AGCUAGCGG- -5'
28077 5' -54.4 NC_005887.1 + 31753 0.67 0.638065
Target:  5'- cUGCGCCCcGUGUGacaaGUcgUCGGagUCGCCc -3'
miRNA:   3'- cAUGCGGGaCGUACg---CA--AGCU--AGCGG- -5'
28077 5' -54.4 NC_005887.1 + 28000 0.67 0.626784
Target:  5'- --gUGCCCgGCAcgcUGCuucaCGAUCGCCg -3'
miRNA:   3'- cauGCGGGaCGU---ACGcaa-GCUAGCGG- -5'
28077 5' -54.4 NC_005887.1 + 26718 0.67 0.626784
Target:  5'- -gGCGCCCUGaUcgGCGagccCGGcCGCCu -3'
miRNA:   3'- caUGCGGGAC-GuaCGCaa--GCUaGCGG- -5'
28077 5' -54.4 NC_005887.1 + 39760 0.67 0.626784
Target:  5'- uGUcCGCCUUGUccGCGUacCGcUCGCCg -3'
miRNA:   3'- -CAuGCGGGACGuaCGCAa-GCuAGCGG- -5'
28077 5' -54.4 NC_005887.1 + 12478 0.67 0.626784
Target:  5'- cGUACGCUCggccugccGCAggacGUGUUC-AUCGCCu -3'
miRNA:   3'- -CAUGCGGGa-------CGUa---CGCAAGcUAGCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.