miRNA display CGI


Results 1 - 20 of 101 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28078 3' -60.3 NC_005887.1 + 12601 0.66 0.418948
Target:  5'- ---gGCCGcGaCGCUCGGCGUgCugaCGCa -3'
miRNA:   3'- gagaCGGCuC-GCGAGCCGCA-Gug-GCG- -5'
28078 3' -60.3 NC_005887.1 + 27665 0.66 0.418948
Target:  5'- -gCUGCCGcGCGCgCGGCuugaUCGuCUGCa -3'
miRNA:   3'- gaGACGGCuCGCGaGCCGc---AGU-GGCG- -5'
28078 3' -60.3 NC_005887.1 + 28319 0.66 0.418948
Target:  5'- -gUUGCUGGaaGCcuguugUCGGCGUCugCGCc -3'
miRNA:   3'- gaGACGGCUcgCG------AGCCGCAGugGCG- -5'
28078 3' -60.3 NC_005887.1 + 41704 0.66 0.418948
Target:  5'- gUCaUGCgCGuGCGCUCGccgcGCGcuuUCAUCGCg -3'
miRNA:   3'- gAG-ACG-GCuCGCGAGC----CGC---AGUGGCG- -5'
28078 3' -60.3 NC_005887.1 + 25047 0.66 0.418948
Target:  5'- ---cGCgGuGCGCcgaacCGGCGUUugCGCg -3'
miRNA:   3'- gagaCGgCuCGCGa----GCCGCAGugGCG- -5'
28078 3' -60.3 NC_005887.1 + 31290 0.66 0.418023
Target:  5'- cCUC-GUCGAGCucgaccgGCaUCGGCG-CACCGg -3'
miRNA:   3'- -GAGaCGGCUCG-------CG-AGCCGCaGUGGCg -5'
28078 3' -60.3 NC_005887.1 + 27480 0.66 0.409748
Target:  5'- uUCUGCCGcgcgguGCGCgcuguugcugCGGUGUgCAcgcCCGCg -3'
miRNA:   3'- gAGACGGCu-----CGCGa---------GCCGCA-GU---GGCG- -5'
28078 3' -60.3 NC_005887.1 + 6890 0.66 0.409748
Target:  5'- -cCUGCuCGAcaacgaacGC-CUCGGCGUCAUcuaCGCg -3'
miRNA:   3'- gaGACG-GCU--------CGcGAGCCGCAGUG---GCG- -5'
28078 3' -60.3 NC_005887.1 + 36936 0.66 0.409748
Target:  5'- ---cGCCGGuCGCUgCGGCGcCGCCcGCc -3'
miRNA:   3'- gagaCGGCUcGCGA-GCCGCaGUGG-CG- -5'
28078 3' -60.3 NC_005887.1 + 13141 0.66 0.400675
Target:  5'- --gUGCCGGGC-CUCGucuCGUCgcuuGCCGCg -3'
miRNA:   3'- gagACGGCUCGcGAGCc--GCAG----UGGCG- -5'
28078 3' -60.3 NC_005887.1 + 5683 0.66 0.400675
Target:  5'- ---gGCUGAGgacuaccaGCUCGGCGaCACCGa -3'
miRNA:   3'- gagaCGGCUCg-------CGAGCCGCaGUGGCg -5'
28078 3' -60.3 NC_005887.1 + 8462 0.66 0.400675
Target:  5'- ----aUCGAGCGCcCGGCGcaACCGCu -3'
miRNA:   3'- gagacGGCUCGCGaGCCGCagUGGCG- -5'
28078 3' -60.3 NC_005887.1 + 33468 0.66 0.400675
Target:  5'- gUCcG-CGAGCGCguaCGGCGUCGCgaucucgacgggCGCg -3'
miRNA:   3'- gAGaCgGCUCGCGa--GCCGCAGUG------------GCG- -5'
28078 3' -60.3 NC_005887.1 + 38160 0.66 0.391732
Target:  5'- aUCagGCCGAGCGCgaaauaggCGGUGUgcagCAUgGCc -3'
miRNA:   3'- gAGa-CGGCUCGCGa-------GCCGCA----GUGgCG- -5'
28078 3' -60.3 NC_005887.1 + 10310 0.66 0.391732
Target:  5'- gUCUG-CGGGCG-UCGGUGcC-CCGCa -3'
miRNA:   3'- gAGACgGCUCGCgAGCCGCaGuGGCG- -5'
28078 3' -60.3 NC_005887.1 + 4619 0.66 0.391732
Target:  5'- gCUC-GCCGcGGCGC-CGGUG--GCCGCc -3'
miRNA:   3'- -GAGaCGGC-UCGCGaGCCGCagUGGCG- -5'
28078 3' -60.3 NC_005887.1 + 5147 0.66 0.391732
Target:  5'- -gCUGcCCGA-CG-UCGGCG-CGCCGCu -3'
miRNA:   3'- gaGAC-GGCUcGCgAGCCGCaGUGGCG- -5'
28078 3' -60.3 NC_005887.1 + 4476 0.66 0.391732
Target:  5'- -gCUGCCGcgaaGGUGCcgaaCGGCGcgcgCAUCGCg -3'
miRNA:   3'- gaGACGGC----UCGCGa---GCCGCa---GUGGCG- -5'
28078 3' -60.3 NC_005887.1 + 39318 0.66 0.390845
Target:  5'- gUCauugGCCGAGCaugGCUuugcccgCGGCGcUgGCCGCa -3'
miRNA:   3'- gAGa---CGGCUCG---CGA-------GCCGC-AgUGGCG- -5'
28078 3' -60.3 NC_005887.1 + 14503 0.66 0.382919
Target:  5'- ---cGCCGcGGUGCUUGGUGgu-CCGCu -3'
miRNA:   3'- gagaCGGC-UCGCGAGCCGCaguGGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.