miRNA display CGI


Results 1 - 20 of 46 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28079 5' -55.1 NC_005887.1 + 24615 0.66 0.611738
Target:  5'- --cGCGC-GGCCGUgccGAGCGUcuUGAAGa -3'
miRNA:   3'- guaCGCGuUCGGCG---CUCGCG--ACUUUa -5'
28079 5' -55.1 NC_005887.1 + 22977 0.66 0.611738
Target:  5'- -cUGCGCGAGCauggCGCGuuGCcGCUGAu-- -3'
miRNA:   3'- guACGCGUUCG----GCGCu-CG-CGACUuua -5'
28079 5' -55.1 NC_005887.1 + 18976 0.66 0.611738
Target:  5'- --aGCGCGAGCagcaaaagcaucUGCGAGCGCcGcgGUg -3'
miRNA:   3'- guaCGCGUUCG------------GCGCUCGCGaCuuUA- -5'
28079 5' -55.1 NC_005887.1 + 27474 0.66 0.611738
Target:  5'- --gGCGCAuucuGCCGCGcggugcGCGCUGuuGc -3'
miRNA:   3'- guaCGCGUu---CGGCGCu-----CGCGACuuUa -5'
28079 5' -55.1 NC_005887.1 + 9753 0.66 0.611738
Target:  5'- uCGUGUGCGGGCUGCacguGCaCUGGAAc -3'
miRNA:   3'- -GUACGCGUUCGGCGcu--CGcGACUUUa -5'
28079 5' -55.1 NC_005887.1 + 11630 0.66 0.60028
Target:  5'- gCGUGCGCAAuGCCGagcuCGAcGCGUUGcAGAc -3'
miRNA:   3'- -GUACGCGUU-CGGC----GCU-CGCGAC-UUUa -5'
28079 5' -55.1 NC_005887.1 + 27653 0.66 0.60028
Target:  5'- uGUGCGCGcugagcuGCCGCGcGCGCg----- -3'
miRNA:   3'- gUACGCGUu------CGGCGCuCGCGacuuua -5'
28079 5' -55.1 NC_005887.1 + 40138 0.66 0.60028
Target:  5'- gAUGCGCcAGCCGCccaucgguuuGCGCUGc--- -3'
miRNA:   3'- gUACGCGuUCGGCGcu--------CGCGACuuua -5'
28079 5' -55.1 NC_005887.1 + 38230 0.66 0.599136
Target:  5'- -uUGCGCGuGGCCGggaugguCGAGCGCUcGAu-- -3'
miRNA:   3'- guACGCGU-UCGGC-------GCUCGCGA-CUuua -5'
28079 5' -55.1 NC_005887.1 + 4138 0.66 0.588852
Target:  5'- --cGCGCAAgGCUGCGcGCGaCUGGc-- -3'
miRNA:   3'- guaCGCGUU-CGGCGCuCGC-GACUuua -5'
28079 5' -55.1 NC_005887.1 + 5827 0.66 0.588852
Target:  5'- gUcgGCGCGGGUCGCGaAGgGC-GAAGc -3'
miRNA:   3'- -GuaCGCGUUCGGCGC-UCgCGaCUUUa -5'
28079 5' -55.1 NC_005887.1 + 6295 0.66 0.587711
Target:  5'- gCGUGCGCGAGCgcgucgaggccuUGCGccucgccGGCGCcGAGGUg -3'
miRNA:   3'- -GUACGCGUUCG------------GCGC-------UCGCGaCUUUA- -5'
28079 5' -55.1 NC_005887.1 + 30629 0.66 0.577463
Target:  5'- uCGUGCGC--GCCGUGcGCGCggcGAAGc -3'
miRNA:   3'- -GUACGCGuuCGGCGCuCGCGa--CUUUa -5'
28079 5' -55.1 NC_005887.1 + 4592 0.66 0.577463
Target:  5'- --gGCGCAGGCCGCGcAGaUGCa----- -3'
miRNA:   3'- guaCGCGUUCGGCGC-UC-GCGacuuua -5'
28079 5' -55.1 NC_005887.1 + 18144 0.66 0.577463
Target:  5'- --aGCGCGGGCCGCcGAcgucGUGCcGAAGc -3'
miRNA:   3'- guaCGCGUUCGGCG-CU----CGCGaCUUUa -5'
28079 5' -55.1 NC_005887.1 + 27021 0.66 0.577463
Target:  5'- uGUGCGCAAccuCgGCGAGCGCg----- -3'
miRNA:   3'- gUACGCGUUc--GgCGCUCGCGacuuua -5'
28079 5' -55.1 NC_005887.1 + 7213 0.66 0.554843
Target:  5'- gCGUGCGCAGGCgcugucggCGuCGGGCGCa----- -3'
miRNA:   3'- -GUACGCGUUCG--------GC-GCUCGCGacuuua -5'
28079 5' -55.1 NC_005887.1 + 37008 0.67 0.548106
Target:  5'- --cGCGCAGGCCGUacgcgaacacgucggGAuacuggucgGCGCUGAGc- -3'
miRNA:   3'- guaCGCGUUCGGCG---------------CU---------CGCGACUUua -5'
28079 5' -55.1 NC_005887.1 + 39346 0.67 0.543629
Target:  5'- --gGCGCuGGCCGCaGGCGCguUGAc-- -3'
miRNA:   3'- guaCGCGuUCGGCGcUCGCG--ACUuua -5'
28079 5' -55.1 NC_005887.1 + 24429 0.67 0.543629
Target:  5'- uCGUGCGCAcgcaGGUCGCGAGCag-GAc-- -3'
miRNA:   3'- -GUACGCGU----UCGGCGCUCGcgaCUuua -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.