miRNA display CGI


Results 1 - 20 of 40 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28089 5' -51.2 NC_005887.1 + 30157 0.66 0.893006
Target:  5'- cGCgGCGCUGuccuuCGcGGUCUGcauGUUCUGCa -3'
miRNA:   3'- -CG-CGUGACu----GCuCUAGGCu--UAAGGCG- -5'
28089 5' -51.2 NC_005887.1 + 12489 0.66 0.892263
Target:  5'- uCGCGCUGAuCGAuucagcgGcgCUGGAU-CCGCa -3'
miRNA:   3'- cGCGUGACU-GCU-------CuaGGCUUAaGGCG- -5'
28089 5' -51.2 NC_005887.1 + 35488 0.66 0.885453
Target:  5'- uGCGCGUUGgccgacgucGCGAGGUCCGAcacgucgauGUUgcagacCCGCg -3'
miRNA:   3'- -CGCGUGAC---------UGCUCUAGGCU---------UAA------GGCG- -5'
28089 5' -51.2 NC_005887.1 + 7198 0.66 0.884682
Target:  5'- cGUGCAgCgUGACGgccgcccguccguGGcgCCGGAUUCCGa -3'
miRNA:   3'- -CGCGU-G-ACUGC-------------UCuaGGCUUAAGGCg -5'
28089 5' -51.2 NC_005887.1 + 15471 0.66 0.877621
Target:  5'- cGCGCACcaaGACGc-GUUCGAGcuggCCGCg -3'
miRNA:   3'- -CGCGUGa--CUGCucUAGGCUUaa--GGCG- -5'
28089 5' -51.2 NC_005887.1 + 3768 0.66 0.876823
Target:  5'- cGCGUcguacugGCUcGACGAGggCCGcga-CCGCa -3'
miRNA:   3'- -CGCG-------UGA-CUGCUCuaGGCuuaaGGCG- -5'
28089 5' -51.2 NC_005887.1 + 30737 0.66 0.875218
Target:  5'- uGCGCACgcucugcaccugcgUGuCGAGcgCCGA--UCCGg -3'
miRNA:   3'- -CGCGUG--------------ACuGCUCuaGGCUuaAGGCg -5'
28089 5' -51.2 NC_005887.1 + 23427 0.66 0.869518
Target:  5'- gGC-CGCUG-CGAGAUUCGGugagcgCUGCg -3'
miRNA:   3'- -CGcGUGACuGCUCUAGGCUuaa---GGCG- -5'
28089 5' -51.2 NC_005887.1 + 27735 0.66 0.869518
Target:  5'- aGCGCGCccucGACG-GcgCCGAcggCCGUa -3'
miRNA:   3'- -CGCGUGa---CUGCuCuaGGCUuaaGGCG- -5'
28089 5' -51.2 NC_005887.1 + 9614 0.66 0.869518
Target:  5'- cGCGCAC--GCGAGcgCCGcgcuaccCCGCc -3'
miRNA:   3'- -CGCGUGacUGCUCuaGGCuuaa---GGCG- -5'
28089 5' -51.2 NC_005887.1 + 8000 0.66 0.869518
Target:  5'- ----cUUGACGAgGAUUCGAAggCCGCg -3'
miRNA:   3'- cgcguGACUGCU-CUAGGCUUaaGGCG- -5'
28089 5' -51.2 NC_005887.1 + 34652 0.66 0.86115
Target:  5'- gGCGCGCcggcuUGcCGGuuUCCGGAU-CCGCc -3'
miRNA:   3'- -CGCGUG-----ACuGCUcuAGGCUUAaGGCG- -5'
28089 5' -51.2 NC_005887.1 + 30940 0.67 0.843653
Target:  5'- aGCGCGCUcGGCGGuGAUgUCGGcgcCCGCg -3'
miRNA:   3'- -CGCGUGA-CUGCU-CUA-GGCUuaaGGCG- -5'
28089 5' -51.2 NC_005887.1 + 40532 0.67 0.843653
Target:  5'- gGCGCGCggcagcGACGAcGGUCUGGcgcUCgCGCa -3'
miRNA:   3'- -CGCGUGa-----CUGCU-CUAGGCUua-AG-GCG- -5'
28089 5' -51.2 NC_005887.1 + 7400 0.67 0.838215
Target:  5'- uGCGCACgcccGcCGAG-UUCGAagccggcgacggcaaGUUCCGCu -3'
miRNA:   3'- -CGCGUGa---CuGCUCuAGGCU---------------UAAGGCG- -5'
28089 5' -51.2 NC_005887.1 + 33420 0.67 0.834542
Target:  5'- gGCGCuCUGcgucGCGcGGAUCgCGAacGUUCCGUc -3'
miRNA:   3'- -CGCGuGAC----UGC-UCUAG-GCU--UAAGGCG- -5'
28089 5' -51.2 NC_005887.1 + 27210 0.67 0.825203
Target:  5'- aGCGC-CUGcAUGGGGUCgGucgggUCCGUg -3'
miRNA:   3'- -CGCGuGAC-UGCUCUAGgCuua--AGGCG- -5'
28089 5' -51.2 NC_005887.1 + 14230 0.67 0.815646
Target:  5'- cGCGCugUucGGCGcGGcAUCCGAucuugCCGCc -3'
miRNA:   3'- -CGCGugA--CUGC-UC-UAGGCUuaa--GGCG- -5'
28089 5' -51.2 NC_005887.1 + 12614 0.67 0.811765
Target:  5'- gGCGUGCUGACGcAGAagcCCGAccagccacugcCCGCa -3'
miRNA:   3'- -CGCGUGACUGC-UCUa--GGCUuaa--------GGCG- -5'
28089 5' -51.2 NC_005887.1 + 17755 0.67 0.805882
Target:  5'- cGCGCgGCUGAUGGcgcccGGUUCGAAggacUUCCGg -3'
miRNA:   3'- -CGCG-UGACUGCU-----CUAGGCUU----AAGGCg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.