miRNA display CGI


Results 1 - 20 of 81 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28091 5' -50.9 NC_005887.1 + 29661 0.66 0.886023
Target:  5'- -cGCGCgUGACCc-UGCAACGCGAu-- -3'
miRNA:   3'- cuCGUG-ACUGGuuGCGUUGUGCUucc -5'
28091 5' -50.9 NC_005887.1 + 14195 0.66 0.886023
Target:  5'- -cGCGCUGuCgGGCGCGGCcuCGGacAGGg -3'
miRNA:   3'- cuCGUGACuGgUUGCGUUGu-GCU--UCC- -5'
28091 5' -50.9 NC_005887.1 + 12631 0.66 0.886023
Target:  5'- cGGCGCgUGAUCcugcGACGCGACgGCGAGuGGc -3'
miRNA:   3'- cUCGUG-ACUGG----UUGCGUUG-UGCUU-CC- -5'
28091 5' -50.9 NC_005887.1 + 12057 0.66 0.878101
Target:  5'- cGGC-CUGACUGcgaacgucguGCGCGGCACGAu-- -3'
miRNA:   3'- cUCGuGACUGGU----------UGCGUUGUGCUucc -5'
28091 5' -50.9 NC_005887.1 + 12953 0.66 0.869899
Target:  5'- cGAGC-CUGAUCGcgaccGCGCcGCAUGGgccgAGGg -3'
miRNA:   3'- -CUCGuGACUGGU-----UGCGuUGUGCU----UCC- -5'
28091 5' -50.9 NC_005887.1 + 8722 0.66 0.869899
Target:  5'- aAGCGCU--UCGuCGCGGcCACGAAGGa -3'
miRNA:   3'- cUCGUGAcuGGUuGCGUU-GUGCUUCC- -5'
28091 5' -50.9 NC_005887.1 + 26211 0.66 0.869899
Target:  5'- cGGCGgUGGCCGGCcuGCAGCugGcgcacGGGu -3'
miRNA:   3'- cUCGUgACUGGUUG--CGUUGugCu----UCC- -5'
28091 5' -50.9 NC_005887.1 + 948 0.66 0.869899
Target:  5'- cGAGUGCUucGGCgAAggcgUGCAGCACGAGGu -3'
miRNA:   3'- -CUCGUGA--CUGgUU----GCGUUGUGCUUCc -5'
28091 5' -50.9 NC_005887.1 + 14030 0.66 0.861425
Target:  5'- cGGCGCgccGCCGGCGCAGCcugagACGAugccguucccGGGa -3'
miRNA:   3'- cUCGUGac-UGGUUGCGUUG-----UGCU----------UCC- -5'
28091 5' -50.9 NC_005887.1 + 41452 0.66 0.861425
Target:  5'- -uGCGCUGcUCGgcACGCcGCGCGAGGa -3'
miRNA:   3'- cuCGUGACuGGU--UGCGuUGUGCUUCc -5'
28091 5' -50.9 NC_005887.1 + 9307 0.66 0.861425
Target:  5'- cGGGCACcGaaacGCCGACGC-ACACGuccGGu -3'
miRNA:   3'- -CUCGUGaC----UGGUUGCGuUGUGCuu-CC- -5'
28091 5' -50.9 NC_005887.1 + 4951 0.66 0.861425
Target:  5'- aGGCAgUcgcGACC-GCGCAGCGCcagcuGAAGGa -3'
miRNA:   3'- cUCGUgA---CUGGuUGCGUUGUG-----CUUCC- -5'
28091 5' -50.9 NC_005887.1 + 23656 0.66 0.858831
Target:  5'- -cGCGCUGAuugucggagauaauCCGGCGCG-CGCGAAc- -3'
miRNA:   3'- cuCGUGACU--------------GGUUGCGUuGUGCUUcc -5'
28091 5' -50.9 NC_005887.1 + 22982 0.66 0.855335
Target:  5'- cGAGCauggcgcguugccGCUGAUCGACGCcggucgcuucugcgaGGCggugGCGAAGGu -3'
miRNA:   3'- -CUCG-------------UGACUGGUUGCG---------------UUG----UGCUUCC- -5'
28091 5' -50.9 NC_005887.1 + 17746 0.66 0.853572
Target:  5'- cGGCAC-GGCC-GCGCGGCugauggcgcccgguuCGAAGGa -3'
miRNA:   3'- cUCGUGaCUGGuUGCGUUGu--------------GCUUCC- -5'
28091 5' -50.9 NC_005887.1 + 18787 0.66 0.852686
Target:  5'- -cGCACUG-CCGGCcgGCGAUGCGGGcGGc -3'
miRNA:   3'- cuCGUGACuGGUUG--CGUUGUGCUU-CC- -5'
28091 5' -50.9 NC_005887.1 + 16468 0.66 0.852686
Target:  5'- -uGCGCUcGACC-GCGCGGCAgGAuccGGc -3'
miRNA:   3'- cuCGUGA-CUGGuUGCGUUGUgCUu--CC- -5'
28091 5' -50.9 NC_005887.1 + 40360 0.66 0.843693
Target:  5'- cGAGCGC-GGCCGugcCGCucgucgcGCGCGAGGa -3'
miRNA:   3'- -CUCGUGaCUGGUu--GCGu------UGUGCUUCc -5'
28091 5' -50.9 NC_005887.1 + 16678 0.66 0.843693
Target:  5'- --cCACUGACCGACgaugGCGACGCGcugcGGc -3'
miRNA:   3'- cucGUGACUGGUUG----CGUUGUGCuu--CC- -5'
28091 5' -50.9 NC_005887.1 + 1233 0.67 0.834455
Target:  5'- cGGGCGCUG-CgCGGCGCucagcACGCGAAa- -3'
miRNA:   3'- -CUCGUGACuG-GUUGCGu----UGUGCUUcc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.