miRNA display CGI


Results 1 - 20 of 124 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28092 3' -59.8 NC_005887.1 + 32741 0.66 0.413893
Target:  5'- --aGCGCGGcGCUcGCGUGCGcGCcGGCg -3'
miRNA:   3'- gugCGCGUUcCGA-CGCGCGC-UGaCCG- -5'
28092 3' -59.8 NC_005887.1 + 40165 0.66 0.413893
Target:  5'- cCGCGUGUGA-GCUGCGCGaCGGCacgaagGGa -3'
miRNA:   3'- -GUGCGCGUUcCGACGCGC-GCUGa-----CCg -5'
28092 3' -59.8 NC_005887.1 + 17740 0.66 0.413893
Target:  5'- gACGCucgGCAcGGC--CGCGCGGCUgauGGCg -3'
miRNA:   3'- gUGCG---CGUuCCGacGCGCGCUGA---CCG- -5'
28092 3' -59.8 NC_005887.1 + 37070 0.66 0.413893
Target:  5'- cCGCGCGCu--GCU-CGgGCGACUGcGUu -3'
miRNA:   3'- -GUGCGCGuucCGAcGCgCGCUGAC-CG- -5'
28092 3' -59.8 NC_005887.1 + 28403 0.66 0.404642
Target:  5'- uCACGCGCAcgucgcaGCcgaGCGCGCG-CaGGCg -3'
miRNA:   3'- -GUGCGCGUuc-----CGa--CGCGCGCuGaCCG- -5'
28092 3' -59.8 NC_005887.1 + 7107 0.66 0.404642
Target:  5'- uCGCGCGUggucuaacGAGGCgggGCgGCGCuGC-GGCg -3'
miRNA:   3'- -GUGCGCG--------UUCCGa--CG-CGCGcUGaCCG- -5'
28092 3' -59.8 NC_005887.1 + 3388 0.66 0.404642
Target:  5'- -gUGCGCAc-GCUGUucgccGCGCGcuaccGCUGGCa -3'
miRNA:   3'- guGCGCGUucCGACG-----CGCGC-----UGACCG- -5'
28092 3' -59.8 NC_005887.1 + 38169 0.66 0.404642
Target:  5'- aGCGCGaaauAGGCgGUGUGCaGCaUGGCc -3'
miRNA:   3'- gUGCGCgu--UCCGaCGCGCGcUG-ACCG- -5'
28092 3' -59.8 NC_005887.1 + 25044 0.66 0.404642
Target:  5'- gCACGCGguGcgccgaaccGGCguuUGCGCGCG-C-GGCg -3'
miRNA:   3'- -GUGCGCguU---------CCG---ACGCGCGCuGaCCG- -5'
28092 3' -59.8 NC_005887.1 + 30620 0.66 0.404642
Target:  5'- uGCGUGCAuucguGcGCgccgUGCGCGCGGCgaaGCg -3'
miRNA:   3'- gUGCGCGUu----C-CG----ACGCGCGCUGac-CG- -5'
28092 3' -59.8 NC_005887.1 + 37561 0.66 0.404642
Target:  5'- cCGCGaGCAcGGCcuCGC-CGGCUGGCg -3'
miRNA:   3'- -GUGCgCGUuCCGacGCGcGCUGACCG- -5'
28092 3' -59.8 NC_005887.1 + 24332 0.66 0.404642
Target:  5'- gGCGCGCGuaa--GCGCGCGGC-GGUc -3'
miRNA:   3'- gUGCGCGUuccgaCGCGCGCUGaCCG- -5'
28092 3' -59.8 NC_005887.1 + 17775 0.66 0.404642
Target:  5'- cCAUGCGCAGGugugaaGCUGaCG-GCGAUcaugGGCg -3'
miRNA:   3'- -GUGCGCGUUC------CGAC-GCgCGCUGa---CCG- -5'
28092 3' -59.8 NC_005887.1 + 29521 0.66 0.395524
Target:  5'- gGCGCGUuguAGaacagcacGUcGCGCGCGACggccUGGCa -3'
miRNA:   3'- gUGCGCGu--UC--------CGaCGCGCGCUG----ACCG- -5'
28092 3' -59.8 NC_005887.1 + 26527 0.66 0.395524
Target:  5'- -cCGCGCAAGcGCUGCaccuGCGCcucguggucaguGACUGccGCa -3'
miRNA:   3'- guGCGCGUUC-CGACG----CGCG------------CUGAC--CG- -5'
28092 3' -59.8 NC_005887.1 + 23507 0.66 0.392814
Target:  5'- gACGUGUucGGCcGCGCugacgaacgcgcggGUGAgCUGGCa -3'
miRNA:   3'- gUGCGCGuuCCGaCGCG--------------CGCU-GACCG- -5'
28092 3' -59.8 NC_005887.1 + 31184 0.66 0.386539
Target:  5'- -uUGUGCucGGGCaUGCGCGCGuagauuuCgGGCg -3'
miRNA:   3'- guGCGCGu-UCCG-ACGCGCGCu------GaCCG- -5'
28092 3' -59.8 NC_005887.1 + 22250 0.66 0.386539
Target:  5'- uCACGaucaGCGAcGGUgGCGCGCaGCaGGCg -3'
miRNA:   3'- -GUGCg---CGUU-CCGaCGCGCGcUGaCCG- -5'
28092 3' -59.8 NC_005887.1 + 17312 0.66 0.386539
Target:  5'- uGCG-GCAuGGGUucUGCGCuacCGGCUGGCc -3'
miRNA:   3'- gUGCgCGU-UCCG--ACGCGc--GCUGACCG- -5'
28092 3' -59.8 NC_005887.1 + 4405 0.66 0.385648
Target:  5'- uGCGCGCc-GGCgaagGCGCgGCGAUccugcaaUGGUu -3'
miRNA:   3'- gUGCGCGuuCCGa---CGCG-CGCUG-------ACCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.