miRNA display CGI


Results 1 - 20 of 52 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28094 5' -49.4 NC_005887.1 + 14001 0.66 0.924663
Target:  5'- -gUGCUCGAAgccaaugccgcGCCGG-CGCAGAc--- -3'
miRNA:   3'- cgGCGAGCUU-----------UGGCCuGCGUUUauuu -5'
28094 5' -49.4 NC_005887.1 + 3338 0.66 0.924663
Target:  5'- aGCCGCcgUCGAcuGCgCGGugGCAc----- -3'
miRNA:   3'- -CGGCG--AGCUu-UG-GCCugCGUuuauuu -5'
28094 5' -49.4 NC_005887.1 + 28958 0.66 0.924663
Target:  5'- gGUC-CUCGAcuucgAGCCGGACG-AAGUGGAc -3'
miRNA:   3'- -CGGcGAGCU-----UUGGCCUGCgUUUAUUU- -5'
28094 5' -49.4 NC_005887.1 + 4897 0.66 0.924663
Target:  5'- gGUCGC-CGAgGGCCGG-CGCGAGg--- -3'
miRNA:   3'- -CGGCGaGCU-UUGGCCuGCGUUUauuu -5'
28094 5' -49.4 NC_005887.1 + 12030 0.66 0.92278
Target:  5'- cGCCGCUCGcAACCGucgaagacaacacaGGCGCc------ -3'
miRNA:   3'- -CGGCGAGCuUUGGC--------------CUGCGuuuauuu -5'
28094 5' -49.4 NC_005887.1 + 19123 0.66 0.918277
Target:  5'- cGCCGCUCGcguGCCGucGGCGUg------ -3'
miRNA:   3'- -CGGCGAGCuu-UGGC--CUGCGuuuauuu -5'
28094 5' -49.4 NC_005887.1 + 16087 0.66 0.911577
Target:  5'- cGCCGCacauGGCCGGugGUGAAa--- -3'
miRNA:   3'- -CGGCGagcuUUGGCCugCGUUUauuu -5'
28094 5' -49.4 NC_005887.1 + 34745 0.66 0.911577
Target:  5'- cGCCGCccaUCGAucAACCGGcgccgcuuACGCGAu---- -3'
miRNA:   3'- -CGGCG---AGCU--UUGGCC--------UGCGUUuauuu -5'
28094 5' -49.4 NC_005887.1 + 33883 0.66 0.91089
Target:  5'- cGUCGC-CGAGcgguugcGCCGGGCGCu------ -3'
miRNA:   3'- -CGGCGaGCUU-------UGGCCUGCGuuuauuu -5'
28094 5' -49.4 NC_005887.1 + 39918 0.66 0.904565
Target:  5'- uGCgCGCagaUCG-AGCCGGGCGCGu----- -3'
miRNA:   3'- -CG-GCG---AGCuUUGGCCUGCGUuuauuu -5'
28094 5' -49.4 NC_005887.1 + 40992 0.66 0.904565
Target:  5'- uGCCcgaGCUCGAAGCCuGGuACGU--GUGGAc -3'
miRNA:   3'- -CGG---CGAGCUUUGG-CC-UGCGuuUAUUU- -5'
28094 5' -49.4 NC_005887.1 + 10169 0.66 0.904565
Target:  5'- gGCUGgcaUCGGcauCCGGACGCGAAc--- -3'
miRNA:   3'- -CGGCg--AGCUuu-GGCCUGCGUUUauuu -5'
28094 5' -49.4 NC_005887.1 + 39153 0.67 0.897243
Target:  5'- gGCCGCucucccauUCGGAGaCGGACGCGc----- -3'
miRNA:   3'- -CGGCG--------AGCUUUgGCCUGCGUuuauuu -5'
28094 5' -49.4 NC_005887.1 + 23456 0.67 0.897243
Target:  5'- gGCUGC-CGguGCCGGGCGaccagAAAUAAu -3'
miRNA:   3'- -CGGCGaGCuuUGGCCUGCg----UUUAUUu -5'
28094 5' -49.4 NC_005887.1 + 11095 0.67 0.889617
Target:  5'- gGCCGa-CGAGuACUGGugGCAGAa--- -3'
miRNA:   3'- -CGGCgaGCUU-UGGCCugCGUUUauuu -5'
28094 5' -49.4 NC_005887.1 + 40033 0.67 0.889617
Target:  5'- cGCgGCUCGAGgcgGCCGGccuACGCccGAUAc- -3'
miRNA:   3'- -CGgCGAGCUU---UGGCC---UGCGu-UUAUuu -5'
28094 5' -49.4 NC_005887.1 + 15589 0.67 0.889617
Target:  5'- aUCGC-CGAAGCUGaGACGCAGc---- -3'
miRNA:   3'- cGGCGaGCUUUGGC-CUGCGUUuauuu -5'
28094 5' -49.4 NC_005887.1 + 12991 0.67 0.881692
Target:  5'- uGCCGCUCGcggcuGCCGGGuucucCGCGu----- -3'
miRNA:   3'- -CGGCGAGCuu---UGGCCU-----GCGUuuauuu -5'
28094 5' -49.4 NC_005887.1 + 10514 0.67 0.881692
Target:  5'- aGCCGUauUCGGAACgGGGCgGCGGcaAGAa -3'
miRNA:   3'- -CGGCG--AGCUUUGgCCUG-CGUUuaUUU- -5'
28094 5' -49.4 NC_005887.1 + 16202 0.67 0.881692
Target:  5'- gGCCGCgcugCGA--CCGGAcaCGCAGGUc-- -3'
miRNA:   3'- -CGGCGa---GCUuuGGCCU--GCGUUUAuuu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.