miRNA display CGI


Results 1 - 20 of 114 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28096 3' -59.7 NC_005887.1 + 28804 0.66 0.417375
Target:  5'- gGCGGCaGCGCAUCGCcgaucgcauuCGCgaucGUGGcGCGc -3'
miRNA:   3'- -CGUCG-CGCGUGGCGu---------GCGa---CAUC-CGC- -5'
28096 3' -59.7 NC_005887.1 + 41485 0.68 0.322688
Target:  5'- gGCGGCGCGgGCCaCGCGUccacGGGCa -3'
miRNA:   3'- -CGUCGCGCgUGGcGUGCGaca-UCCGc -5'
28096 3' -59.7 NC_005887.1 + 36920 0.68 0.299809
Target:  5'- aGCgGGCGCGUggucgcGCCGguCGCUGc-GGCGc -3'
miRNA:   3'- -CG-UCGCGCG------UGGCguGCGACauCCGC- -5'
28096 3' -59.7 NC_005887.1 + 2221 1.1 0.000212
Target:  5'- cGCAGCGCGCACCGCACGCUGUAGGCGu -3'
miRNA:   3'- -CGUCGCGCGUGGCGUGCGACAUCCGC- -5'
28096 3' -59.7 NC_005887.1 + 3526 0.66 0.407168
Target:  5'- -gAGCGguagucauggcuuUGUGCUGCGCGUUGUcGGCGa -3'
miRNA:   3'- cgUCGC-------------GCGUGGCGUGCGACAuCCGC- -5'
28096 3' -59.7 NC_005887.1 + 26746 0.66 0.395309
Target:  5'- uGCuGCGCGaCGcCCGUGCGCUGcgucucagcuucGGCGa -3'
miRNA:   3'- -CGuCGCGC-GU-GGCGUGCGACau----------CCGC- -5'
28096 3' -59.7 NC_005887.1 + 12629 0.66 0.381022
Target:  5'- cGCGGCGCGUgaucCUGCgACGCgac-GGCGa -3'
miRNA:   3'- -CGUCGCGCGu---GGCG-UGCGacauCCGC- -5'
28096 3' -59.7 NC_005887.1 + 33471 0.66 0.381022
Target:  5'- cGCgAGCGCGUACgGCGuCGCgaucucgacGGGCGc -3'
miRNA:   3'- -CG-UCGCGCGUGgCGU-GCGaca------UCCGC- -5'
28096 3' -59.7 NC_005887.1 + 12682 0.67 0.367085
Target:  5'- aGCaAGCGCcagcugugcuaccucGCGCCGCGCGUgaGUGacgacGGCGa -3'
miRNA:   3'- -CG-UCGCG---------------CGUGGCGUGCGa-CAU-----CCGC- -5'
28096 3' -59.7 NC_005887.1 + 14125 0.67 0.336221
Target:  5'- aGCuGCGCGCGCUGCucaaaaccgccgagACGCgc--GGCGc -3'
miRNA:   3'- -CGuCGCGCGUGGCG--------------UGCGacauCCGC- -5'
28096 3' -59.7 NC_005887.1 + 21035 0.67 0.355181
Target:  5'- uGCGGUcgGCGCGgUGgGCGUgcccgugaaUGUGGGCGa -3'
miRNA:   3'- -CGUCG--CGCGUgGCgUGCG---------ACAUCCGC- -5'
28096 3' -59.7 NC_005887.1 + 16273 0.67 0.37227
Target:  5'- cGCcGCGCGgGCCGCugacGCGCUGaccAGGa- -3'
miRNA:   3'- -CGuCGCGCgUGGCG----UGCGACa--UCCgc -5'
28096 3' -59.7 NC_005887.1 + 26244 0.66 0.414576
Target:  5'- cGCAGCGC-CACCGgaaaGCGUuucaccaccggccaUGUGcGGCGc -3'
miRNA:   3'- -CGUCGCGcGUGGCg---UGCG--------------ACAU-CCGC- -5'
28096 3' -59.7 NC_005887.1 + 6292 0.67 0.346846
Target:  5'- aCGGCGUGCGCgaGCGCGUcg-AGGCc -3'
miRNA:   3'- cGUCGCGCGUGg-CGUGCGacaUCCGc -5'
28096 3' -59.7 NC_005887.1 + 39144 0.66 0.408089
Target:  5'- uGCgAGCGCuCGCgGCccuucuCGCUGUccGGGCGc -3'
miRNA:   3'- -CG-UCGCGcGUGgCGu-----GCGACA--UCCGC- -5'
28096 3' -59.7 NC_005887.1 + 23725 0.66 0.381022
Target:  5'- aGCAGCGgGcCGCCGauCGCGCUGccGaGCa -3'
miRNA:   3'- -CGUCGCgC-GUGGC--GUGCGACauC-CGc -5'
28096 3' -59.7 NC_005887.1 + 41710 0.67 0.338652
Target:  5'- cGCGuGCGCuCGCCGCGCGCUuucaucgcGGCu -3'
miRNA:   3'- -CGU-CGCGcGUGGCGUGCGAcau-----CCGc -5'
28096 3' -59.7 NC_005887.1 + 27420 0.68 0.307294
Target:  5'- gGCAGCGCGCGgCGUGCGUcGaucGCGa -3'
miRNA:   3'- -CGUCGCGCGUgGCGUGCGaCaucCGC- -5'
28096 3' -59.7 NC_005887.1 + 42042 0.66 0.408089
Target:  5'- uGUAcGCGCGCACCGCGgccuCGCUGa----- -3'
miRNA:   3'- -CGU-CGCGCGUGGCGU----GCGACauccgc -5'
28096 3' -59.7 NC_005887.1 + 17415 0.66 0.386339
Target:  5'- --cGCGCGCACCGCGuCGCgaucgacaacGGUGc -3'
miRNA:   3'- cguCGCGCGUGGCGU-GCGacau------CCGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.