miRNA display CGI


Results 1 - 20 of 91 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28106 3' -59.7 NC_005887.1 + 37127 0.65 0.447074
Target:  5'- aCG-CCGUCAGCGagaagGCCgGCaagaaggGGCuCAGCg -3'
miRNA:   3'- -GCaGGCAGUUGCg----CGGaCG-------CCG-GUCG- -5'
28106 3' -59.7 NC_005887.1 + 26931 0.65 0.445146
Target:  5'- cCG-CCGUCGACGaacCCUGCuGGCCccacagauccugcaGGCc -3'
miRNA:   3'- -GCaGGCAGUUGCgc-GGACG-CCGG--------------UCG- -5'
28106 3' -59.7 NC_005887.1 + 23190 0.65 0.444183
Target:  5'- aCG-CCGUCAccucAC-CGCCagccaacacguacGUGGCCAGCa -3'
miRNA:   3'- -GCaGGCAGU----UGcGCGGa------------CGCCGGUCG- -5'
28106 3' -59.7 NC_005887.1 + 10161 0.66 0.442262
Target:  5'- uGgCCGUCGGCGCggGCCgcccacacgacggaaUGCGGCUccugcuggaAGCa -3'
miRNA:   3'- gCaGGCAGUUGCG--CGG---------------ACGCCGG---------UCG- -5'
28106 3' -59.7 NC_005887.1 + 12214 0.66 0.438434
Target:  5'- gCGaUCGUCAccaaucugGCGCGCgacgGCGGCCuGCn -3'
miRNA:   3'- -GCaGGCAGU--------UGCGCGga--CGCCGGuCG- -5'
28106 3' -59.7 NC_005887.1 + 26302 0.66 0.435575
Target:  5'- --aUCGUCGAgcggaucggacccgUGCGCCagcUGCaGGCCGGCc -3'
miRNA:   3'- gcaGGCAGUU--------------GCGCGG---ACG-CCGGUCG- -5'
28106 3' -59.7 NC_005887.1 + 2460 0.66 0.428947
Target:  5'- aCGgcgCCGUCGACgagGCGCUgacGCGGaucaucgaCGGCg -3'
miRNA:   3'- -GCa--GGCAGUUG---CGCGGa--CGCCg-------GUCG- -5'
28106 3' -59.7 NC_005887.1 + 11706 0.66 0.428947
Target:  5'- gCGUCUG-CAACGCGUCgagcuCGGCauuGCg -3'
miRNA:   3'- -GCAGGCaGUUGCGCGGac---GCCGgu-CG- -5'
28106 3' -59.7 NC_005887.1 + 35835 0.66 0.428005
Target:  5'- gCGcCgCGUCGGCGUagaucaucGCCUGCGGauugcgcUCGGCa -3'
miRNA:   3'- -GCaG-GCAGUUGCG--------CGGACGCC-------GGUCG- -5'
28106 3' -59.7 NC_005887.1 + 15556 0.66 0.419582
Target:  5'- gCGUCCaUCuGACGCGC----GGCCAGCu -3'
miRNA:   3'- -GCAGGcAG-UUGCGCGgacgCCGGUCG- -5'
28106 3' -59.7 NC_005887.1 + 21911 0.66 0.419582
Target:  5'- aGU-CGUCAACGUGCCUugaaUGGCCguuucauucGGCg -3'
miRNA:   3'- gCAgGCAGUUGCGCGGAc---GCCGG---------UCG- -5'
28106 3' -59.7 NC_005887.1 + 32176 0.66 0.419582
Target:  5'- gGUCgGcgcUCAGCGaugaGCCagugccagUGCGGCCAGa -3'
miRNA:   3'- gCAGgC---AGUUGCg---CGG--------ACGCCGGUCg -5'
28106 3' -59.7 NC_005887.1 + 40941 0.66 0.419582
Target:  5'- cCGUCgCGuuucuucuUCGACGCGCgCgGCGGCUucGCc -3'
miRNA:   3'- -GCAG-GC--------AGUUGCGCG-GaCGCCGGu-CG- -5'
28106 3' -59.7 NC_005887.1 + 16381 0.66 0.419582
Target:  5'- aGUgCGUCAAUGCaGUCgagacgGCcGCCGGCc -3'
miRNA:   3'- gCAgGCAGUUGCG-CGGa-----CGcCGGUCG- -5'
28106 3' -59.7 NC_005887.1 + 35425 0.66 0.415871
Target:  5'- gGcCCG-CGugGUGCCgggcgugaagcucGUGGCCGGCc -3'
miRNA:   3'- gCaGGCaGUugCGCGGa------------CGCCGGUCG- -5'
28106 3' -59.7 NC_005887.1 + 10490 0.66 0.414024
Target:  5'- cCGUCgGUCAGacCGCGaCCguaacgccuucgaggUGCccgaGGCCGGCg -3'
miRNA:   3'- -GCAGgCAGUU--GCGC-GG---------------ACG----CCGGUCG- -5'
28106 3' -59.7 NC_005887.1 + 17546 0.66 0.410343
Target:  5'- aCGUCgGUCGGCGCGUaCUGgaacuaCGuGaCCGGCg -3'
miRNA:   3'- -GCAGgCAGUUGCGCG-GAC------GC-C-GGUCG- -5'
28106 3' -59.7 NC_005887.1 + 11621 0.66 0.410343
Target:  5'- -uUCCG-CGAccgcCGCGCgCUGCGcGCCgAGCu -3'
miRNA:   3'- gcAGGCaGUU----GCGCG-GACGC-CGG-UCG- -5'
28106 3' -59.7 NC_005887.1 + 16483 0.66 0.409426
Target:  5'- --cCCGUCGAucucggcCGCGUgaGCuuccGGCCGGCg -3'
miRNA:   3'- gcaGGCAGUU-------GCGCGgaCG----CCGGUCG- -5'
28106 3' -59.7 NC_005887.1 + 24662 0.66 0.40123
Target:  5'- -aUCCGcuUCGACauuguccaGCC-GCGGCCGGCa -3'
miRNA:   3'- gcAGGC--AGUUGcg------CGGaCGCCGGUCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.