miRNA display CGI


Results 1 - 20 of 58 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28110 3' -56.4 NC_005887.1 + 41596 0.66 0.575178
Target:  5'- cAGcgGCGGCccAGGUGCggcggcCGgCGCGGCc -3'
miRNA:   3'- -UCuaCGUUG--UCUACGa-----GCgGCGCCGc -5'
28110 3' -56.4 NC_005887.1 + 39023 0.66 0.575178
Target:  5'- ---aGuCGACGGcgGCUUGCUGCGGa- -3'
miRNA:   3'- ucuaC-GUUGUCuaCGAGCGGCGCCgc -5'
28110 3' -56.4 NC_005887.1 + 4888 0.66 0.575178
Target:  5'- ---cGCGAC-GAUGgUCGCCGagggcCGGCGc -3'
miRNA:   3'- ucuaCGUUGuCUACgAGCGGC-----GCCGC- -5'
28110 3' -56.4 NC_005887.1 + 24640 0.66 0.575178
Target:  5'- -cAUGC-GCAGGUGUgaaGCUGaCGGCGa -3'
miRNA:   3'- ucUACGuUGUCUACGag-CGGC-GCCGC- -5'
28110 3' -56.4 NC_005887.1 + 11112 0.66 0.575178
Target:  5'- uGGUGC-GCGcGAaGCUggccgaggCGCCGUGGCGg -3'
miRNA:   3'- uCUACGuUGU-CUaCGA--------GCGGCGCCGC- -5'
28110 3' -56.4 NC_005887.1 + 40140 0.66 0.575178
Target:  5'- cGGUGCGcgcuGCGcgccgcGCUCGCCGCGuGUGa -3'
miRNA:   3'- uCUACGU----UGUcua---CGAGCGGCGC-CGC- -5'
28110 3' -56.4 NC_005887.1 + 13329 0.66 0.564116
Target:  5'- cGGccGCAucGCGGAU-CUCGCCGCGcaGUGg -3'
miRNA:   3'- -UCuaCGU--UGUCUAcGAGCGGCGC--CGC- -5'
28110 3' -56.4 NC_005887.1 + 17654 0.66 0.564116
Target:  5'- aAGcUGCAggGCAcGAUcCUCGCCGCgcuuGGCGa -3'
miRNA:   3'- -UCuACGU--UGU-CUAcGAGCGGCG----CCGC- -5'
28110 3' -56.4 NC_005887.1 + 10998 0.66 0.55311
Target:  5'- aGGAUG--GCGuGGUGCUCgGgUGCGGCGg -3'
miRNA:   3'- -UCUACguUGU-CUACGAG-CgGCGCCGC- -5'
28110 3' -56.4 NC_005887.1 + 483 0.66 0.542169
Target:  5'- ---aGCAACAGcgGg-CGgCGCGGCGc -3'
miRNA:   3'- ucuaCGUUGUCuaCgaGCgGCGCCGC- -5'
28110 3' -56.4 NC_005887.1 + 4485 0.66 0.535639
Target:  5'- aAGGUGCcgAACGGcGcgcgcaucgcgcgucUGCUCGCCGacuaCGGCGg -3'
miRNA:   3'- -UCUACG--UUGUC-U---------------ACGAGCGGC----GCCGC- -5'
28110 3' -56.4 NC_005887.1 + 1420 0.67 0.520513
Target:  5'- aGGAUGUAGCGcucGAgcguCUCGCCcuGCGGCu -3'
miRNA:   3'- -UCUACGUUGU---CUac--GAGCGG--CGCCGc -5'
28110 3' -56.4 NC_005887.1 + 10508 0.67 0.520513
Target:  5'- ---cGCGAUGGGUGCacugCGCCGuCGGUc -3'
miRNA:   3'- ucuaCGUUGUCUACGa---GCGGC-GCCGc -5'
28110 3' -56.4 NC_005887.1 + 5575 0.67 0.520513
Target:  5'- --cUGCGGCcGGUGCUgcggccggUGCUGCGGCc -3'
miRNA:   3'- ucuACGUUGuCUACGA--------GCGGCGCCGc -5'
28110 3' -56.4 NC_005887.1 + 18496 0.67 0.520513
Target:  5'- gAGAUcGCGccgauCAGcgucGUGCUgacgacggCGCCGCGGCGu -3'
miRNA:   3'- -UCUA-CGUu----GUC----UACGA--------GCGGCGCCGC- -5'
28110 3' -56.4 NC_005887.1 + 41691 0.67 0.509812
Target:  5'- cAGAcGCAGCAGAUcCUCacggGCCGCGcCGg -3'
miRNA:   3'- -UCUaCGUUGUCUAcGAG----CGGCGCcGC- -5'
28110 3' -56.4 NC_005887.1 + 30860 0.67 0.503435
Target:  5'- cGGUGCGcgccauugaucgcgcGCAGAaggaaCUCGCCGCGcGCa -3'
miRNA:   3'- uCUACGU---------------UGUCUac---GAGCGGCGC-CGc -5'
28110 3' -56.4 NC_005887.1 + 33144 0.67 0.499204
Target:  5'- uAGAaGCAGCcGAccg-UGCCGCGGCGg -3'
miRNA:   3'- -UCUaCGUUGuCUacgaGCGGCGCCGC- -5'
28110 3' -56.4 NC_005887.1 + 30114 0.67 0.498148
Target:  5'- uGAUGgAGCuGgcGCUCGCCuaugaggGUGGCGu -3'
miRNA:   3'- uCUACgUUGuCuaCGAGCGG-------CGCCGC- -5'
28110 3' -56.4 NC_005887.1 + 3871 0.67 0.49604
Target:  5'- aAGGUGCGaaagccgcuguucuGCAcGAUGCg-GUCGCGGCc -3'
miRNA:   3'- -UCUACGU--------------UGU-CUACGagCGGCGCCGc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.