miRNA display CGI


Results 1 - 20 of 47 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28110 5' -55.6 NC_005887.1 + 1841 0.66 0.655635
Target:  5'- gGCCGaCGCGcaggucgagcauGUCGAGGAUCggCuucGCGAg -3'
miRNA:   3'- -CGGCcGCGC------------UAGUUCCUAGa-Gu--CGCU- -5'
28110 5' -55.6 NC_005887.1 + 6994 0.66 0.655635
Target:  5'- -aCGGCGCGGccCAugccgaguugcGGGAUucgCUCGGCGGc -3'
miRNA:   3'- cgGCCGCGCUa-GU-----------UCCUA---GAGUCGCU- -5'
28110 5' -55.6 NC_005887.1 + 2506 0.66 0.655635
Target:  5'- cGCCGuaGCGcgCGAGGugucauUCgUCGGCGc -3'
miRNA:   3'- -CGGCcgCGCuaGUUCCu-----AG-AGUCGCu -5'
28110 5' -55.6 NC_005887.1 + 34704 0.66 0.644488
Target:  5'- aGCCGGCGCGccucGUCGAcGcGAa--CGGCGAa -3'
miRNA:   3'- -CGGCCGCGC----UAGUU-C-CUagaGUCGCU- -5'
28110 5' -55.6 NC_005887.1 + 11425 0.66 0.644488
Target:  5'- cGCCcGCGCuGAUCAGGcucagugugCUCAGCGu -3'
miRNA:   3'- -CGGcCGCG-CUAGUUCcua------GAGUCGCu -5'
28110 5' -55.6 NC_005887.1 + 4404 0.66 0.643373
Target:  5'- cGCCGGCGuCGAUCAGuuccugcGGcauGUC-CGGCa- -3'
miRNA:   3'- -CGGCCGC-GCUAGUU-------CC---UAGaGUCGcu -5'
28110 5' -55.6 NC_005887.1 + 12886 0.66 0.63333
Target:  5'- uGCCGuGCGCGAgcu--GAUCggcaCGGCGAg -3'
miRNA:   3'- -CGGC-CGCGCUaguucCUAGa---GUCGCU- -5'
28110 5' -55.6 NC_005887.1 + 4355 0.66 0.62217
Target:  5'- cGCCGGCGCGGauguGGAUgUCgAGUa- -3'
miRNA:   3'- -CGGCCGCGCUaguuCCUAgAG-UCGcu -5'
28110 5' -55.6 NC_005887.1 + 41679 0.66 0.62217
Target:  5'- aGCCGGacgaagguaGCGAgcugcgCGAGGggCUCaucaaGGCGAu -3'
miRNA:   3'- -CGGCCg--------CGCUa-----GUUCCuaGAG-----UCGCU- -5'
28110 5' -55.6 NC_005887.1 + 23624 0.66 0.62217
Target:  5'- uGCCGGCcgGCGAUgCGGGcGGcgUCAGCGu -3'
miRNA:   3'- -CGGCCG--CGCUA-GUUC-CUagAGUCGCu -5'
28110 5' -55.6 NC_005887.1 + 2817 0.66 0.611019
Target:  5'- uCCGGaGCGAUCAuGGcuaGUCuguUCAGCGGu -3'
miRNA:   3'- cGGCCgCGCUAGUuCC---UAG---AGUCGCU- -5'
28110 5' -55.6 NC_005887.1 + 11434 0.66 0.599887
Target:  5'- nGCCaacaGGcCGCGAUCAuGGAUCgcaacgcgCAGCu- -3'
miRNA:   3'- -CGG----CC-GCGCUAGUuCCUAGa-------GUCGcu -5'
28110 5' -55.6 NC_005887.1 + 17728 0.67 0.588784
Target:  5'- cGCCaaGCGCGG-CGAGGAUCgugcccugCAGCu- -3'
miRNA:   3'- -CGGc-CGCGCUaGUUCCUAGa-------GUCGcu -5'
28110 5' -55.6 NC_005887.1 + 8862 0.67 0.588784
Target:  5'- cGCCGGCGCGcccGUCGA-GAUC---GCGAc -3'
miRNA:   3'- -CGGCCGCGC---UAGUUcCUAGaguCGCU- -5'
28110 5' -55.6 NC_005887.1 + 16155 0.67 0.577718
Target:  5'- aCCGGCGCGccgagugcgCGAGcGAUCgaGGCGAa -3'
miRNA:   3'- cGGCCGCGCua-------GUUC-CUAGagUCGCU- -5'
28110 5' -55.6 NC_005887.1 + 22944 0.67 0.555733
Target:  5'- aCCaGCGCG--CGAGGAUCUgaUAGCGGc -3'
miRNA:   3'- cGGcCGCGCuaGUUCCUAGA--GUCGCU- -5'
28110 5' -55.6 NC_005887.1 + 37111 0.67 0.54483
Target:  5'- gGCCGGCaaGA---AGGggCUCAGCGc -3'
miRNA:   3'- -CGGCCGcgCUaguUCCuaGAGUCGCu -5'
28110 5' -55.6 NC_005887.1 + 10477 0.67 0.54483
Target:  5'- gGCCGGCGCGAUCAcgcucgacuGGUCcgCAuCGAu -3'
miRNA:   3'- -CGGCCGCGCUAGUuc-------CUAGa-GUcGCU- -5'
28110 5' -55.6 NC_005887.1 + 37706 0.67 0.533997
Target:  5'- cGCCGGgGgCGAUCAGG---UUCAGCGc -3'
miRNA:   3'- -CGGCCgC-GCUAGUUCcuaGAGUCGCu -5'
28110 5' -55.6 NC_005887.1 + 41526 0.68 0.512571
Target:  5'- uGCuCGGCaaGAUCcgcGAGGcgCUCGGCGc -3'
miRNA:   3'- -CG-GCCGcgCUAG---UUCCuaGAGUCGCu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.