miRNA display CGI


Results 1 - 20 of 53 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28111 5' -51.8 NC_005887.1 + 24917 0.66 0.887225
Target:  5'- gCAGCCGGaUCGgcACCGUugucGAUCGCGa-- -3'
miRNA:   3'- gGUUGGUC-AGC--UGGCA----CUAGUGCagg -5'
28111 5' -51.8 NC_005887.1 + 35686 0.66 0.879576
Target:  5'- gCGAUCGG-CGGCCGgcuUCGCGguuUCCg -3'
miRNA:   3'- gGUUGGUCaGCUGGCacuAGUGC---AGG- -5'
28111 5' -51.8 NC_005887.1 + 34844 0.66 0.879576
Target:  5'- cCCAACCu-UCGACgGcaaccgacuUGAUCGCGgCCu -3'
miRNA:   3'- -GGUUGGucAGCUGgC---------ACUAGUGCaGG- -5'
28111 5' -51.8 NC_005887.1 + 32776 0.66 0.879576
Target:  5'- gCAGCCGGcUCGugCGcagGAUCggcGCGcgCCg -3'
miRNA:   3'- gGUUGGUC-AGCugGCa--CUAG---UGCa-GG- -5'
28111 5' -51.8 NC_005887.1 + 3163 0.66 0.871661
Target:  5'- gCCGcuuuuCCuucaugCGGCCGUGGUCgGCGUUCa -3'
miRNA:   3'- -GGUu----GGuca---GCUGGCACUAG-UGCAGG- -5'
28111 5' -51.8 NC_005887.1 + 42123 0.66 0.871661
Target:  5'- gUCGAuCCAGUCGGCgagcaGGUCcAUGUCCg -3'
miRNA:   3'- -GGUU-GGUCAGCUGgca--CUAG-UGCAGG- -5'
28111 5' -51.8 NC_005887.1 + 28095 0.66 0.871661
Target:  5'- gCCGuuuACCGGggCGugCGUGAcggUCugGUUg -3'
miRNA:   3'- -GGU---UGGUCa-GCugGCACU---AGugCAGg -5'
28111 5' -51.8 NC_005887.1 + 12857 0.66 0.871661
Target:  5'- aCCAACaCGGaaggcaCGACCGUGG-CAgGUgCCg -3'
miRNA:   3'- -GGUUG-GUCa-----GCUGGCACUaGUgCA-GG- -5'
28111 5' -51.8 NC_005887.1 + 9554 0.66 0.871661
Target:  5'- gCAugCcggGGUCGGCCG-GGUCGuuCGUCg -3'
miRNA:   3'- gGUugG---UCAGCUGGCaCUAGU--GCAGg -5'
28111 5' -51.8 NC_005887.1 + 28222 0.66 0.863488
Target:  5'- aCGACCAGUCGGCgugcgagGUGuugCAgGUCg -3'
miRNA:   3'- gGUUGGUCAGCUGg------CACua-GUgCAGg -5'
28111 5' -51.8 NC_005887.1 + 22677 0.66 0.863488
Target:  5'- aUCGGCCGGUgGgcgcaACCGUG-UUGCGUUCc -3'
miRNA:   3'- -GGUUGGUCAgC-----UGGCACuAGUGCAGG- -5'
28111 5' -51.8 NC_005887.1 + 8046 0.66 0.863488
Target:  5'- aCGACguGcUCGACgcgugucugCGUGcgCACGUCUg -3'
miRNA:   3'- gGUUGguC-AGCUG---------GCACuaGUGCAGG- -5'
28111 5' -51.8 NC_005887.1 + 31394 0.66 0.855064
Target:  5'- aCGGcCCGGUCGGCaCGUGGg-ACGUgaCCa -3'
miRNA:   3'- gGUU-GGUCAGCUG-GCACUagUGCA--GG- -5'
28111 5' -51.8 NC_005887.1 + 14699 0.66 0.846396
Target:  5'- aCCGcGCCGG-CuGCCGUGAgCGCGcCCu -3'
miRNA:   3'- -GGU-UGGUCaGcUGGCACUaGUGCaGG- -5'
28111 5' -51.8 NC_005887.1 + 29708 0.67 0.837494
Target:  5'- gCAGCCAcUCG-CCGUcgcgucgcagGAUCACGcgCCg -3'
miRNA:   3'- gGUUGGUcAGCuGGCA----------CUAGUGCa-GG- -5'
28111 5' -51.8 NC_005887.1 + 36507 0.67 0.83478
Target:  5'- aCCGugCGGUCGACCGcagcaucgGGcggcggcagguauuUCGCGaauUCCg -3'
miRNA:   3'- -GGUugGUCAGCUGGCa-------CU--------------AGUGC---AGG- -5'
28111 5' -51.8 NC_005887.1 + 10171 0.67 0.828368
Target:  5'- gCCGAUCAGcUGGCCGUcGG-CGCGggCCg -3'
miRNA:   3'- -GGUUGGUCaGCUGGCA-CUaGUGCa-GG- -5'
28111 5' -51.8 NC_005887.1 + 14885 0.67 0.828368
Target:  5'- cCCGccAUCAGcgucgCGGCCGccagauUGAUCGgGUCCa -3'
miRNA:   3'- -GGU--UGGUCa----GCUGGC------ACUAGUgCAGG- -5'
28111 5' -51.8 NC_005887.1 + 5500 0.67 0.828368
Target:  5'- --uGCCAG-CgGGCgCGUGGUCGCG-CCg -3'
miRNA:   3'- gguUGGUCaG-CUG-GCACUAGUGCaGG- -5'
28111 5' -51.8 NC_005887.1 + 15748 0.67 0.828368
Target:  5'- uCCGGCCGcgCGGCgGUGAgCugGUCg -3'
miRNA:   3'- -GGUUGGUcaGCUGgCACUaGugCAGg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.