miRNA display CGI


Results 1 - 20 of 192 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28113 3' -64.3 NC_005887.1 + 6927 0.66 0.272848
Target:  5'- -gCGCGUUGgCCGACGUCGcgagguccgacacGUcgauguugcagacccGCGCCa -3'
miRNA:   3'- ugGCGCGACgGGCUGCAGC-------------CG---------------CGCGG- -5'
28113 3' -64.3 NC_005887.1 + 16959 0.66 0.270871
Target:  5'- aACCGCGCggcgGCa--AUGUCGGCGaGCUc -3'
miRNA:   3'- -UGGCGCGa---CGggcUGCAGCCGCgCGG- -5'
28113 3' -64.3 NC_005887.1 + 5392 0.66 0.270871
Target:  5'- aGCCaGCGCgaccgGUgaaCCGGCGggCGGCGcCGCa -3'
miRNA:   3'- -UGG-CGCGa----CG---GGCUGCa-GCCGC-GCGg -5'
28113 3' -64.3 NC_005887.1 + 15866 0.66 0.270871
Target:  5'- cCCGCGCgcaGCa-GGCGcaccagcagcUCGGUGCGCUc -3'
miRNA:   3'- uGGCGCGa--CGggCUGC----------AGCCGCGCGG- -5'
28113 3' -64.3 NC_005887.1 + 39176 0.66 0.270871
Target:  5'- gACgCGCGCgagauCCCGAacaCGUCGGCcaacugcugcaGCGUCa -3'
miRNA:   3'- -UG-GCGCGac---GGGCU---GCAGCCG-----------CGCGG- -5'
28113 3' -64.3 NC_005887.1 + 14614 0.66 0.270871
Target:  5'- gGCCGUcg-GCgCCGuCGagGGCGCGCUc -3'
miRNA:   3'- -UGGCGcgaCG-GGCuGCagCCGCGCGG- -5'
28113 3' -64.3 NC_005887.1 + 9366 0.66 0.270871
Target:  5'- uCgGCGUuucggUGCCCGuaaccugcgGCGUCGcCGUGCCg -3'
miRNA:   3'- uGgCGCG-----ACGGGC---------UGCAGCcGCGCGG- -5'
28113 3' -64.3 NC_005887.1 + 6349 0.66 0.270871
Target:  5'- gACCgGUGCgaaCCGACGUgCGGUG-GCCu -3'
miRNA:   3'- -UGG-CGCGacgGGCUGCA-GCCGCgCGG- -5'
28113 3' -64.3 NC_005887.1 + 28548 0.66 0.270871
Target:  5'- cGCCGgGCUG-CUGAauuUGUaGGCGuCGCCg -3'
miRNA:   3'- -UGGCgCGACgGGCU---GCAgCCGC-GCGG- -5'
28113 3' -64.3 NC_005887.1 + 10633 0.66 0.270215
Target:  5'- cUUGCGCUGUCCcguuugcGGCGcCGGCGUugaGCUg -3'
miRNA:   3'- uGGCGCGACGGG-------CUGCaGCCGCG---CGG- -5'
28113 3' -64.3 NC_005887.1 + 13062 0.66 0.264366
Target:  5'- aGCCGC-CUgGUCCGG-GUCGGUGcCGCg -3'
miRNA:   3'- -UGGCGcGA-CGGGCUgCAGCCGC-GCGg -5'
28113 3' -64.3 NC_005887.1 + 12104 0.66 0.264366
Target:  5'- cGCCuGUGUUGUcuUCGACGguugcgagCGGCGUGCg -3'
miRNA:   3'- -UGG-CGCGACG--GGCUGCa-------GCCGCGCGg -5'
28113 3' -64.3 NC_005887.1 + 6036 0.66 0.264366
Target:  5'- gAUCGuCGCUGCau--CGcCGGaCGCGCCa -3'
miRNA:   3'- -UGGC-GCGACGggcuGCaGCC-GCGCGG- -5'
28113 3' -64.3 NC_005887.1 + 41521 0.66 0.264366
Target:  5'- gACgGUGCUcggcaagauccGCgaGGCGcUCGGCGCGCa -3'
miRNA:   3'- -UGgCGCGA-----------CGggCUGC-AGCCGCGCGg -5'
28113 3' -64.3 NC_005887.1 + 35061 0.66 0.264366
Target:  5'- --gGuCGCUG-CCGuCGUCGGCGgGCg -3'
miRNA:   3'- uggC-GCGACgGGCuGCAGCCGCgCGg -5'
28113 3' -64.3 NC_005887.1 + 7429 0.66 0.264366
Target:  5'- cGCCGC-CUcGUuuGGCGcUGGCGUGCg -3'
miRNA:   3'- -UGGCGcGA-CGggCUGCaGCCGCGCGg -5'
28113 3' -64.3 NC_005887.1 + 13449 0.66 0.264366
Target:  5'- cGCCGCGCcgGCCUucaGCG-CGaGCGCcaucGCCg -3'
miRNA:   3'- -UGGCGCGa-CGGGc--UGCaGC-CGCG----CGG- -5'
28113 3' -64.3 NC_005887.1 + 29003 0.66 0.264366
Target:  5'- gACCGCcagugcucGCUGUgcgUCGACGcaaUgGGCGCGCg -3'
miRNA:   3'- -UGGCG--------CGACG---GGCUGC---AgCCGCGCGg -5'
28113 3' -64.3 NC_005887.1 + 6494 0.66 0.264366
Target:  5'- uGCCGCGUguUGCCguucaGA--UCGGCcaGCGCCu -3'
miRNA:   3'- -UGGCGCG--ACGGg----CUgcAGCCG--CGCGG- -5'
28113 3' -64.3 NC_005887.1 + 34581 0.66 0.264366
Target:  5'- uCCGCuGCgGCCUGAUG--GGCGUGCa -3'
miRNA:   3'- uGGCG-CGaCGGGCUGCagCCGCGCGg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.