miRNA display CGI


Results 1 - 20 of 196 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28118 3' -59.2 NC_005887.1 + 35559 0.66 0.477535
Target:  5'- gCUCGacAUGUgCGGCgAGCGC-CGGGCa -3'
miRNA:   3'- -GAGCgcUGCA-GCCGgUUGCGcGUCCG- -5'
28118 3' -59.2 NC_005887.1 + 2971 0.66 0.477535
Target:  5'- --gGCGGCGUcguucgcggCGGCCGACGUGUccGUc -3'
miRNA:   3'- gagCGCUGCA---------GCCGGUUGCGCGucCG- -5'
28118 3' -59.2 NC_005887.1 + 16062 0.66 0.477535
Target:  5'- gCUCGCGGCG--GGUCuGCGCGC--GCa -3'
miRNA:   3'- -GAGCGCUGCagCCGGuUGCGCGucCG- -5'
28118 3' -59.2 NC_005887.1 + 34012 0.66 0.477535
Target:  5'- -aCGCGACGUgcucGCCgAGCGCcgucgGCAGGUc -3'
miRNA:   3'- gaGCGCUGCAgc--CGG-UUGCG-----CGUCCG- -5'
28118 3' -59.2 NC_005887.1 + 13882 0.66 0.477535
Target:  5'- uUCGCGAgcuacCGGCUcguGCGCGUcGGCa -3'
miRNA:   3'- gAGCGCUgca--GCCGGu--UGCGCGuCCG- -5'
28118 3' -59.2 NC_005887.1 + 17630 0.66 0.467594
Target:  5'- -cUGCGcACGaCGGUCAGCGCcgugaagcuGCAGGg -3'
miRNA:   3'- gaGCGC-UGCaGCCGGUUGCG---------CGUCCg -5'
28118 3' -59.2 NC_005887.1 + 12603 0.66 0.467594
Target:  5'- -cCGCGACGcUCGGCguGCuGaCGCAGaaGCc -3'
miRNA:   3'- gaGCGCUGC-AGCCGguUG-C-GCGUC--CG- -5'
28118 3' -59.2 NC_005887.1 + 5815 0.66 0.467594
Target:  5'- --gGCGGCGaUCGaGUCGGCGCGggucgcgaaGGGCg -3'
miRNA:   3'- gagCGCUGC-AGC-CGGUUGCGCg--------UCCG- -5'
28118 3' -59.2 NC_005887.1 + 17735 0.66 0.467594
Target:  5'- uUCaaGACGcUCGGCaCGGcCGCGC-GGCu -3'
miRNA:   3'- gAGcgCUGC-AGCCG-GUU-GCGCGuCCG- -5'
28118 3' -59.2 NC_005887.1 + 2425 0.66 0.467594
Target:  5'- uUCGU--CGUCGGCCugcgaGCGCuGGUc -3'
miRNA:   3'- gAGCGcuGCAGCCGGuug--CGCGuCCG- -5'
28118 3' -59.2 NC_005887.1 + 13149 0.66 0.467594
Target:  5'- cCUCGUcuCGUCGcuuGCCGcgcGCGCGCAGacaGCg -3'
miRNA:   3'- -GAGCGcuGCAGC---CGGU---UGCGCGUC---CG- -5'
28118 3' -59.2 NC_005887.1 + 14083 0.66 0.467594
Target:  5'- --gGCGGCGcgcCGGCgGuugcggagGCGCGCGGcGCa -3'
miRNA:   3'- gagCGCUGCa--GCCGgU--------UGCGCGUC-CG- -5'
28118 3' -59.2 NC_005887.1 + 16489 0.66 0.457761
Target:  5'- aUC-CGGCGggcUGGUCGGCGauguCGCAGGCc -3'
miRNA:   3'- gAGcGCUGCa--GCCGGUUGC----GCGUCCG- -5'
28118 3' -59.2 NC_005887.1 + 6816 0.66 0.457761
Target:  5'- -gCGCGAC--UGGCgcuaCGugGCGCGGGUc -3'
miRNA:   3'- gaGCGCUGcaGCCG----GUugCGCGUCCG- -5'
28118 3' -59.2 NC_005887.1 + 29162 0.66 0.457761
Target:  5'- gUCGCGAcCGaCGGUCAcaaG-GCGGGCg -3'
miRNA:   3'- gAGCGCU-GCaGCCGGUug-CgCGUCCG- -5'
28118 3' -59.2 NC_005887.1 + 9208 0.66 0.457761
Target:  5'- -gUGcCGACGUCGGacggccugaauaCCGAUGCGCuuGCg -3'
miRNA:   3'- gaGC-GCUGCAGCC------------GGUUGCGCGucCG- -5'
28118 3' -59.2 NC_005887.1 + 392 0.66 0.44804
Target:  5'- gCUCGCGcACuuccUCGGUguACGCGCGcaccgcGGCc -3'
miRNA:   3'- -GAGCGC-UGc---AGCCGguUGCGCGU------CCG- -5'
28118 3' -59.2 NC_005887.1 + 26404 0.66 0.44804
Target:  5'- uUCGCGcACc-CGGCCAGCGCcgGCcacGGCc -3'
miRNA:   3'- gAGCGC-UGcaGCCGGUUGCG--CGu--CCG- -5'
28118 3' -59.2 NC_005887.1 + 16015 0.66 0.44804
Target:  5'- --aGCGGCGUgCGGCgCGugGC-CGGcGCa -3'
miRNA:   3'- gagCGCUGCA-GCCG-GUugCGcGUC-CG- -5'
28118 3' -59.2 NC_005887.1 + 15439 0.66 0.44804
Target:  5'- -gCGCGGCGUCGaCC--UGCuCGGGCg -3'
miRNA:   3'- gaGCGCUGCAGCcGGuuGCGcGUCCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.