miRNA display CGI


Results 1 - 20 of 69 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28119 3' -57 NC_005887.1 + 35130 0.66 0.579465
Target:  5'- -gUCG-CGcCCGCCGACGACggcaGCGACc- -3'
miRNA:   3'- caGGCaGC-GGCGGCUGUUG----UGCUGac -5'
28119 3' -57 NC_005887.1 + 14699 0.66 0.579465
Target:  5'- -cUCGUCGCgGCgGGCGggccggGCGCGGCg- -3'
miRNA:   3'- caGGCAGCGgCGgCUGU------UGUGCUGac -5'
28119 3' -57 NC_005887.1 + 35742 0.66 0.568575
Target:  5'- -gCCG--GCCGCCGAUcGCGCGcuGCUGu -3'
miRNA:   3'- caGGCagCGGCGGCUGuUGUGC--UGAC- -5'
28119 3' -57 NC_005887.1 + 16263 0.66 0.568575
Target:  5'- -aCCGUCGCCgaGCUGauGCAGCAgauCGACg- -3'
miRNA:   3'- caGGCAGCGG--CGGC--UGUUGU---GCUGac -5'
28119 3' -57 NC_005887.1 + 40435 0.66 0.557738
Target:  5'- uUCC-UCGCgCGCgaCGGCGGCACGGCc- -3'
miRNA:   3'- cAGGcAGCG-GCG--GCUGUUGUGCUGac -5'
28119 3' -57 NC_005887.1 + 14166 0.66 0.557738
Target:  5'- aUCCGUCGacaucgguuaCGUCGAUuGCACGcGCUGu -3'
miRNA:   3'- cAGGCAGCg---------GCGGCUGuUGUGC-UGAC- -5'
28119 3' -57 NC_005887.1 + 10810 0.66 0.557738
Target:  5'- -aCCGUUGCCGgUGACGcuGCuCGGCUu -3'
miRNA:   3'- caGGCAGCGGCgGCUGU--UGuGCUGAc -5'
28119 3' -57 NC_005887.1 + 27266 0.66 0.54696
Target:  5'- -cCCG-CGUCGCCaauGAuCGGCACGACUu -3'
miRNA:   3'- caGGCaGCGGCGG---CU-GUUGUGCUGAc -5'
28119 3' -57 NC_005887.1 + 41646 0.66 0.54696
Target:  5'- -gCCGcCGCUgGCCGACAggaacgucucgGCGCuGGCUGa -3'
miRNA:   3'- caGGCaGCGG-CGGCUGU-----------UGUG-CUGAC- -5'
28119 3' -57 NC_005887.1 + 13563 0.66 0.545886
Target:  5'- -gCUGcCGCCcgagcagGCCGACGACGCGAa-- -3'
miRNA:   3'- caGGCaGCGG-------CGGCUGUUGUGCUgac -5'
28119 3' -57 NC_005887.1 + 16980 0.66 0.536249
Target:  5'- -cCCGUCGUCuuGCCGAUcuGCuCGGCUGc -3'
miRNA:   3'- caGGCAGCGG--CGGCUGu-UGuGCUGAC- -5'
28119 3' -57 NC_005887.1 + 5142 0.66 0.536249
Target:  5'- -aCCG-CGCUGcCCGACGucgGCGCGccGCUGa -3'
miRNA:   3'- caGGCaGCGGC-GGCUGU---UGUGC--UGAC- -5'
28119 3' -57 NC_005887.1 + 24261 0.66 0.536249
Target:  5'- -----aCGCaCGUCGGCAACACGACg- -3'
miRNA:   3'- caggcaGCG-GCGGCUGUUGUGCUGac -5'
28119 3' -57 NC_005887.1 + 26928 0.66 0.536249
Target:  5'- uUCCaGUCGgUGcCCGGCGGCaACGGCUa -3'
miRNA:   3'- cAGG-CAGCgGC-GGCUGUUG-UGCUGAc -5'
28119 3' -57 NC_005887.1 + 14028 0.66 0.535182
Target:  5'- -gCCGgcgCGCCGCCGGCGcagccugAgACGAUg- -3'
miRNA:   3'- caGGCa--GCGGCGGCUGU-------UgUGCUGac -5'
28119 3' -57 NC_005887.1 + 13453 0.67 0.525612
Target:  5'- cGUCCGccgCGCCgGCCuuCAGCGCGAg-- -3'
miRNA:   3'- -CAGGCa--GCGG-CGGcuGUUGUGCUgac -5'
28119 3' -57 NC_005887.1 + 14617 0.67 0.515056
Target:  5'- cGUCgG-CGCCGUCGAgGGCGCG-CUc -3'
miRNA:   3'- -CAGgCaGCGGCGGCUgUUGUGCuGAc -5'
28119 3' -57 NC_005887.1 + 9769 0.67 0.515056
Target:  5'- aGUCCGacaGCCuGCUGAuCGGCAUGACg- -3'
miRNA:   3'- -CAGGCag-CGG-CGGCU-GUUGUGCUGac -5'
28119 3' -57 NC_005887.1 + 38310 0.67 0.504587
Target:  5'- -gCCGUCGCCGuuGuCGAuCAcCGGCUc -3'
miRNA:   3'- caGGCAGCGGCggCuGUU-GU-GCUGAc -5'
28119 3' -57 NC_005887.1 + 7835 0.67 0.504587
Target:  5'- -cCCGUgGUCGCagCGACAGCACGuCg- -3'
miRNA:   3'- caGGCAgCGGCG--GCUGUUGUGCuGac -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.