miRNA display CGI


Results 1 - 20 of 57 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28119 5' -56.2 NC_005887.1 + 40981 0.66 0.595494
Target:  5'- cUCGGUgCGCGCgcgGUAGcccuUCGGCGGCu -3'
miRNA:   3'- aAGCUA-GCGCGa--CGUCu---GGCUGCUGu -5'
28119 5' -56.2 NC_005887.1 + 22138 0.66 0.595494
Target:  5'- -cUGAUCGCGCUcgGCuucaucggcgaaGGGCUGACGcGCAa -3'
miRNA:   3'- aaGCUAGCGCGA--CG------------UCUGGCUGC-UGU- -5'
28119 5' -56.2 NC_005887.1 + 18118 0.66 0.595494
Target:  5'- -cCGGaCGCGCUGUAcgcaACCGGCGAa- -3'
miRNA:   3'- aaGCUaGCGCGACGUc---UGGCUGCUgu -5'
28119 5' -56.2 NC_005887.1 + 695 0.66 0.595494
Target:  5'- -cCGAgUCGaUGCUGCucGCCGACGugAa -3'
miRNA:   3'- aaGCU-AGC-GCGACGucUGGCUGCugU- -5'
28119 5' -56.2 NC_005887.1 + 10298 0.66 0.59326
Target:  5'- gUCGAauaccugaacccCGCGCUGCAGGauGACGAg- -3'
miRNA:   3'- aAGCUa-----------GCGCGACGUCUggCUGCUgu -5'
28119 5' -56.2 NC_005887.1 + 34890 0.66 0.584341
Target:  5'- gUCGuUCGCGCUGCccuucUCGACGAgGa -3'
miRNA:   3'- aAGCuAGCGCGACGucu--GGCUGCUgU- -5'
28119 5' -56.2 NC_005887.1 + 8443 0.66 0.566586
Target:  5'- cUUCG-UCGCGCUcugcgucaggcuuucGCAGGCUucggccgccaGACGGCAc -3'
miRNA:   3'- -AAGCuAGCGCGA---------------CGUCUGG----------CUGCUGU- -5'
28119 5' -56.2 NC_005887.1 + 15781 0.66 0.562168
Target:  5'- -gCGAagGCGCagaaGCAGAUCGauGCGGCAg -3'
miRNA:   3'- aaGCUagCGCGa---CGUCUGGC--UGCUGU- -5'
28119 5' -56.2 NC_005887.1 + 9256 0.66 0.561065
Target:  5'- -gCGAUCGCGUcuaucugUGCAcggcggucGGCaCGGCGACGc -3'
miRNA:   3'- aaGCUAGCGCG-------ACGU--------CUG-GCUGCUGU- -5'
28119 5' -56.2 NC_005887.1 + 15901 0.66 0.551165
Target:  5'- cUCGA-CGCGCaGCuGGCCGACcuGCGu -3'
miRNA:   3'- aAGCUaGCGCGaCGuCUGGCUGc-UGU- -5'
28119 5' -56.2 NC_005887.1 + 9681 0.66 0.551165
Target:  5'- -aCGAagGaCGCcgaccaGCAGACCGAUGACu -3'
miRNA:   3'- aaGCUagC-GCGa-----CGUCUGGCUGCUGu -5'
28119 5' -56.2 NC_005887.1 + 26290 0.66 0.551165
Target:  5'- aUCGGacccgugCGCcaGCUGCAGGCCGGCcACc -3'
miRNA:   3'- aAGCUa------GCG--CGACGUCUGGCUGcUGu -5'
28119 5' -56.2 NC_005887.1 + 32800 0.66 0.544595
Target:  5'- -gCGcgCGcCGCUucacgggcacgaacaGCGGGCCGACGugAu -3'
miRNA:   3'- aaGCuaGC-GCGA---------------CGUCUGGCUGCugU- -5'
28119 5' -56.2 NC_005887.1 + 6086 0.66 0.540229
Target:  5'- -aUGcgCGCGCUGCGaaGCUGuACGACAa -3'
miRNA:   3'- aaGCuaGCGCGACGUc-UGGC-UGCUGU- -5'
28119 5' -56.2 NC_005887.1 + 4923 0.67 0.529367
Target:  5'- aUCGAUCguGCGCUGCAcGGggGACGugAu -3'
miRNA:   3'- aAGCUAG--CGCGACGU-CUggCUGCugU- -5'
28119 5' -56.2 NC_005887.1 + 13582 0.67 0.529367
Target:  5'- aUCGuggCGCGCaUGCccguGCCGGCGACc -3'
miRNA:   3'- aAGCua-GCGCG-ACGuc--UGGCUGCUGu -5'
28119 5' -56.2 NC_005887.1 + 35137 0.67 0.529367
Target:  5'- cUUCGAagUCGCGCccGCcGA-CGACGGCAg -3'
miRNA:   3'- -AAGCU--AGCGCGa-CGuCUgGCUGCUGU- -5'
28119 5' -56.2 NC_005887.1 + 29988 0.67 0.529367
Target:  5'- --aGAUCGUGC-GCgAGGCCcGCGGCAu -3'
miRNA:   3'- aagCUAGCGCGaCG-UCUGGcUGCUGU- -5'
28119 5' -56.2 NC_005887.1 + 24937 0.67 0.529367
Target:  5'- gUCGAUCGCGaCgcgugcgcGCGGGCCGccuugcgcGCGGCc -3'
miRNA:   3'- aAGCUAGCGC-Ga-------CGUCUGGC--------UGCUGu -5'
28119 5' -56.2 NC_005887.1 + 23183 0.67 0.529367
Target:  5'- cUCG-UCGCGCUcGCGaucacGGCCGGgGGCGg -3'
miRNA:   3'- aAGCuAGCGCGA-CGU-----CUGGCUgCUGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.