miRNA display CGI


Results 1 - 20 of 78 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28121 5' -56.6 NC_005887.1 + 4895 0.66 0.589327
Target:  5'- aUGGUCGCcgAGgGcCGGCGCGagguguUCGuGCg -3'
miRNA:   3'- cACCAGCG--UCgCuGUCGUGC------AGCuCG- -5'
28121 5' -56.6 NC_005887.1 + 14701 0.66 0.589327
Target:  5'- --cGUCGCGGCG--GGCGgGcCGGGCg -3'
miRNA:   3'- cacCAGCGUCGCugUCGUgCaGCUCG- -5'
28121 5' -56.6 NC_005887.1 + 41608 0.66 0.578305
Target:  5'- -aGGU-GCGGCGGcCGGCGCGgcccgUGAGg -3'
miRNA:   3'- caCCAgCGUCGCU-GUCGUGCa----GCUCg -5'
28121 5' -56.6 NC_005887.1 + 2832 0.66 0.578305
Target:  5'- cGUGG-CGCAG-GAUAGUGCGUUuauGCg -3'
miRNA:   3'- -CACCaGCGUCgCUGUCGUGCAGcu-CG- -5'
28121 5' -56.6 NC_005887.1 + 15257 0.66 0.567329
Target:  5'- -aGGcagcCGCAGUG-CuGCGCGgCGAGCg -3'
miRNA:   3'- caCCa---GCGUCGCuGuCGUGCaGCUCG- -5'
28121 5' -56.6 NC_005887.1 + 3841 0.66 0.556407
Target:  5'- -cGGUCGCGGCccu----CGUCGAGCc -3'
miRNA:   3'- caCCAGCGUCGcugucguGCAGCUCG- -5'
28121 5' -56.6 NC_005887.1 + 18641 0.66 0.556407
Target:  5'- cUGGaaCGCcGCGACgAGCAUGUCGcccGCg -3'
miRNA:   3'- cACCa-GCGuCGCUG-UCGUGCAGCu--CG- -5'
28121 5' -56.6 NC_005887.1 + 8173 0.66 0.556407
Target:  5'- -cGG-CGCcuCGGCgAGCGCGgCGAGCu -3'
miRNA:   3'- caCCaGCGucGCUG-UCGUGCaGCUCG- -5'
28121 5' -56.6 NC_005887.1 + 24294 0.66 0.553142
Target:  5'- cGUGGccaGCAGCGcaucaaacggcuugGCAacacGCACGUCG-GCa -3'
miRNA:   3'- -CACCag-CGUCGC--------------UGU----CGUGCAGCuCG- -5'
28121 5' -56.6 NC_005887.1 + 33733 0.66 0.545546
Target:  5'- -cGaUCGCGGCGAggauCAGCGCGccggccuucaCGAGCa -3'
miRNA:   3'- caCcAGCGUCGCU----GUCGUGCa---------GCUCG- -5'
28121 5' -56.6 NC_005887.1 + 21606 0.66 0.542301
Target:  5'- -cGGUCGCcugcAGCGucgugaauuucccgGCAGCcgGCGUCGuuGCg -3'
miRNA:   3'- caCCAGCG----UCGC--------------UGUCG--UGCAGCu-CG- -5'
28121 5' -56.6 NC_005887.1 + 12058 0.66 0.534754
Target:  5'- -aGG-CGCcGCGcuGCAGCAgGUCG-GCa -3'
miRNA:   3'- caCCaGCGuCGC--UGUCGUgCAGCuCG- -5'
28121 5' -56.6 NC_005887.1 + 9123 0.66 0.531531
Target:  5'- cUGGUCGCaAGCGcauCGGUauucaggccguccgACGUCG-GCa -3'
miRNA:   3'- cACCAGCG-UCGCu--GUCG--------------UGCAGCuCG- -5'
28121 5' -56.6 NC_005887.1 + 41328 0.67 0.524039
Target:  5'- -aGGUCGaCGGCGcCAuuGCcgACGcCGAGCa -3'
miRNA:   3'- caCCAGC-GUCGCuGU--CG--UGCaGCUCG- -5'
28121 5' -56.6 NC_005887.1 + 14337 0.67 0.524039
Target:  5'- -aGGUgaaCGCGGCGAUcgugaAGCAgCGUgcCGGGCa -3'
miRNA:   3'- caCCA---GCGUCGCUG-----UCGU-GCA--GCUCG- -5'
28121 5' -56.6 NC_005887.1 + 17043 0.67 0.524039
Target:  5'- -cGGaugCGCAGCGGCA-CGC-UUGGGCg -3'
miRNA:   3'- caCCa--GCGUCGCUGUcGUGcAGCUCG- -5'
28121 5' -56.6 NC_005887.1 + 10759 0.67 0.513406
Target:  5'- cUGG-CGCGGCG--GGUACGagGGGCa -3'
miRNA:   3'- cACCaGCGUCGCugUCGUGCagCUCG- -5'
28121 5' -56.6 NC_005887.1 + 8120 0.67 0.513406
Target:  5'- --cGUgCGCAcGCaGACA-CGCGUCGAGCa -3'
miRNA:   3'- cacCA-GCGU-CG-CUGUcGUGCAGCUCG- -5'
28121 5' -56.6 NC_005887.1 + 21266 0.67 0.501814
Target:  5'- -gGGgcacCGCGGCGGCGGCguaugcgcugcugGCGUCGcccacauucacgGGCa -3'
miRNA:   3'- caCCa---GCGUCGCUGUCG-------------UGCAGC------------UCG- -5'
28121 5' -56.6 NC_005887.1 + 28226 0.67 0.492415
Target:  5'- -cGGUUuugaGCAGCGcgcGCAGCuuCG-CGAGCg -3'
miRNA:   3'- caCCAG----CGUCGC---UGUCGu-GCaGCUCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.